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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS05865 [old locus tag: NWMN_1036 ]
  • pan locus tag?: SAUPAN001703000
  • symbol: NWMN_RS05865
  • pan gene symbol?:
  • synonym:
  • product: tail protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS05865 [old locus tag: NWMN_1036 ]
  • symbol: NWMN_RS05865
  • product: tail protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1137855..1139027
  • length: 1173
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1137855..1139027) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTACAAAATAAAAGATGTTGAAACGAGAATAAAAAATGATGGTGTTGACTTAGGTGAC
    ATTGGCTGTCGATTTTACACTGAAGATGAAAATACAGCATCTATAAGAATAGGTATCAAT
    GACAAACAAGGTCGTATCGATCTAAAAGCACATGGCTTAACACCTAGATTACATTTGTTT
    ATGGAAGATGGCTCTATATTCAAAAATGAGCCCCTTATTATCGACGATGTTGTAAAAGGG
    TTCCTTACCTACAAGATACCTAAAAAGGTTATCAAACACGCTGGTTATGTTCGTTGTAAG
    CTGTTTTTAGAGAAAGAAGAAGAAAAAATACATGTCGCGAACTTTTCTTTCAATATCGTT
    GATAGTGGCATTGAATCTGCTGTAGCAAAAGAAATCGATGTTAAATTGGTAGATGATGCT
    ATTACGAGAATCTTAAAAGATAACGCGACAGATTTATTGAGCAAAGACTTTAAAGAGAAA
    ATAGATAAAGATGTCATTTCTTACATTGAAAAGAATGAAAGTAGATTTAAAGGTGTGAAA
    GGTGATAAAGGCGAACCGGGACAACCTGGTGCAAAAGGTGAGACAGGTAAAAAAGGAGAA
    CAAGGCGCACCCGGTAAAAACGGTACTGTAGTATCAATCAATCCTGACACTAAAATGTGG
    CAAATTGATGGTAAAGATACAGATATCAAAGCAGAACCTGAGATATTGGACAAAATCAAT
    ATCGCAAATGTTGAAGGGTTAGAAAATAAATTGCAAGAAGTTGAAAAAATCAAAGATACA
    ACTCTCAACGACTCTAAAACGTATACGGATTCAAAAATTGCTGAACTAGTTGATAGCGCG
    CCTGAATCTATGAATACATTAAGAGAATTAGCAGAAGCAATACAAAACAACTCTATTTCA
    GAAAGTGTATTGCAACAGATTGGCTCAAAAGTTAGTACAGAAGATTTTGAGAAATTCAAA
    CAAACACTAAATGATTTATATGCTCCAAAAAATCATAATCATGACGAGCGGTATGTTTTG
    TCATCTCAAGCTTTTACTAAACAACAAGCGGATAATTTATATCAACTAAAAAGCGCATCT
    CAACCGACGGTTAAAATTTGGACAGGAACAGAAAATGAATATAACTATATATATCAAAAA
    GACCCGAATACGTTGTATTTAATTAAAGGGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
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    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1173

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS05865 [old locus tag: NWMN_1036 ]
  • symbol: NWMN_RS05865
  • description: tail protein
  • length: 390
  • theoretical pI: 5.17785
  • theoretical MW: 43873.2
  • GRAVY: -0.671795

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan definedDUF2479; Domain of unknown function (DUF2479) (PF10651; HMM-score: 112.5)
    Collagen; Collagen triple helix repeat (20 copies) (PF01391; HMM-score: 25.7)
    PBP_dimer; Penicillin-binding Protein dimerisation domain (PF03717; HMM-score: 14.4)
    RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 9.6)
    C1q_TNF (CL0100) DUF1860; Domain of unknown function (DUF1860) (PF08949; HMM-score: 7.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.097
    • Ymax_pos: 69
    • Cmax: 0.108
    • Cmax_pos: 53
    • Smax: 0.123
    • Smax_pos: 32
    • Smean: 0.073
    • D: 0.088
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446198792 NCBI
  • RefSeq: WP_000276647 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGVKGDKGEPGQPGAKGETGKKGEQGAPGKNGTVVSINPDTKMWQIDGKDTDIKAEPEILDKINIANVEGLENKLQEVEKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFEKFKQTLNDLYAPKNHNHDERYVLSSQAFTKQQADNLYQLKSASQPTVKIWTGTENEYNYIYQKDPNTLYLIKG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS05865 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]