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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS09830 [old locus tag: NWMN_1745 ]
  • pan locus tag?: SAUPAN004787000
  • symbol: NWMN_RS09830
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_RS09830 [old locus tag: NWMN_1745 ]
  • symbol: NWMN_RS09830
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1946848..1947210
  • length: 363
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_009641 (1946848..1947210) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTCTGGAGTAATTAATTATCAATTCCGTTTAAATGGTGTTTTAATATTTAAAATTGAA
    CTTTTGATATATTACTATGTCTGGTACACAAATCAATGTTTTATGCTTTACAAAGTTATA
    TTGGCAGTAGTTGACTGCAGTCCACAACATAGAGGCTTCGGAATGTCAGCTTCTATTTCA
    TGCAAGTTGGTGGAGCTCCAACATAGTGGAATTGGATTCCCAATTTCTACAGACATTGCA
    AATTGGGGAAACGGGCCACAAACTCAGAAACTGGTGGAAAGTCAGCTTAAAATAACATGC
    AAGTTGGCGAGGCCCCAAAATAGTGAGATCGGATTTCTAATTTCTACAGACATTGCAAAT
    TAG
    60
    120
    180
    240
    300
    360
    363

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_RS09830 [old locus tag: NWMN_1745 ]
  • symbol: NWMN_RS09830
  • description: hypothetical protein
  • length: 120
  • theoretical pI: 8.31235
  • theoretical MW: 13511.7
  • GRAVY: 0.231667

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.128
    • Ymax_pos: 57
    • Cmax: 0.125
    • Cmax_pos: 57
    • Smax: 0.163
    • Smax_pos: 51
    • Smean: 0.075
    • D: 0.108
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 487705921 NCBI
  • RefSeq: WP_001790153 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MSGVINYQFRLNGVLIFKIELLIYYYVWYTNQCFMLYKVILAVVDCSPQHRGFGMSASISCKLVELQHSGIGFPISTDIANWGNGPQTQKLVESQLKITCKLARPQNSEIGFLISTDIAN

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • NWMN_RS09830 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]