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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
  • pan locus tag?: SAUPAN001740000
  • symbol: NWMN_RS10220
  • pan gene symbol?:
  • synonym:
  • product: major capsid protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
  • symbol: NWMN_RS10220
  • product: major capsid protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2000407..2001381
  • length: 975
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_009641 (2000407..2001381) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1789

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGGAACAAACACAAAAATTAAAATTAAATTTGCAACATTTTGCAAGTAACAATGTTAAA
    CCACAAGTATTTAACCCTGACAATGTAATGATGCACGAAAAGAAAGATGGCACGTTGTTA
    AACGACTTTACAACACCTATCTTACAAGAGGTTATGGAAAACTCTAAAATTATGCAATTA
    GGTAAGTACGAACCAATGGAAGGTACTGAGAAGAAGTTTACTTTTTGGGCTGATAAACCA
    GGTGCTTACTGGGTAGGTGAAGGTCAAAAAATCGAAACATCTAAAGCTACATGGGTTAAT
    GCTACTATGAGAGCGTTTAAATTAGGGGTTATCTTACCTGTAACAAAAGAATTTTTGAAT
    TACACTTATTCACAATTCTTTGAAGAAATGAAGCCTATGATTGCTGAAGCATTCTATAAA
    AAGTTTGATGAAGCGGGTATTTTGAATCAAGGTAACAATCCATTCGGTAAATCAATTGCA
    CAATCAATTGAAAAAACTAATAAGGTTATTAAAGGTGACTTCACACAAGATAACATTATT
    GATTTAGAGGCATTACTTGAAGATGACGAATTAGAAGCAAATGCGTTTATCTCAAAAACA
    CAAAACAGAAGCTTGTTACGTAAAATTGTAGATCCTGAAACTAAGGAACGTATTTATGAC
    CGTAACAGTGATACGTTAGATGGTCTACCTGTGGTTAACCTTAAATCAAGCAATTTAAAA
    CGCGGTGAATTAATTACTGGTGACTTTGATAAGTTGATTTACGGTATCCCTCAATTAATT
    GAATACAAAATCGATGAAACTGCACAATTATCTACAGTTAAAAACGAAGATGGCACACCT
    GTAAACTTATTCGAACAAGACATGGTGGCATTGCGTGCAACTATGCATGTAGCGTTACAC
    ATCGCTGACGATAAAGCATTCGCTAAATTAGTGCCTGCTGACAAAAAAACAGATTCAGTA
    CCAGGAGAAGTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
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    840
    900
    960
    975

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS10220 [old locus tag: NWMN_1789 ]
  • symbol: NWMN_RS10220
  • description: major capsid protein
  • length: 324
  • theoretical pI: 4.87832
  • theoretical MW: 36756.7
  • GRAVY: -0.480864

Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 67.2)
  • TheSEED:
  • PFAM:
    Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 154.1)
    and 2 more
    no clan defined HHA; Haemolysin expression modulating protein (PF05321; HMM-score: 13.6)
    Tudor (CL0049) LBR_tudor; Lamin-B receptor of TUDOR domain (PF09465; HMM-score: 13.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002584
    • TAT(Tat/SPI): 0.000112
    • LIPO(Sec/SPII): 0.000311
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWADKPGAYWVGEGQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTYSQFFEEMKPMIAEAFYKKFDEAGILNQGNNPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIYDRNSDTLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]