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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0142 [new locus tag: SA_RS00880 ]
  • pan locus tag?: SAUPAN000963000
  • symbol: SA0142
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA0142 [new locus tag: SA_RS00880 ]
  • symbol: SA0142
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 162897..164072
  • length: 1176
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGTTTATTGGCAAGAATTTAGAATACGTGAGAAAGCTTAATGCTCTAAGTAGAAAAGAA
    TTATCAGAAAAAATAAATGTGAGTGAACAAGCAATTTGGCAATATGAAACAAAAAATATG
    ATGCCAGAAATTAGTAAAATTTATGATATGACATCTATTTTTAATGTTAAATCTAGCTAC
    TTTATTAGCGAGCAGCCCGAAGAGCTCCTAATAAATTCTGTCGATAAACATAGTATAGCT
    TTTAGAGCAAAAAATTATAAAGTATCTACGAAACTATTAAATAAGCAATATTATCAAGCA
    ATGTATTTATCTAATTTAACTAGCTACTTATTTTCTTTTGTAACGATACCGGATAATATT
    ATTTTATCTTTAATAAATAATTTAGATGAATTGTTGAATGGCAATTTAGAATCACTAAAT
    AAAAAAGAAAGCATAAAAGAAATTGCTAAAGTTGTGAGGGCTAAAATTCTTCAAGATGAA
    AGCAACGAAGCACTATTATTTATGCTTGAAAAAGCGGGTATAGTTATATACGAAAAGCGA
    ATTAATGATAGCATAGACGCATATAGTTTTTGGAGTAAAGATCAGACACCTTTTATTATA
    CTGGGTACAAATAGGGGGGTAGCAGTTAGAAGGAATTTTGATCTTGCACATGAGCTGGGA
    CATCTCGTTCTACATCGTCATATTCAATTCGACTTATTATCTCCTGAAGAATATAAGACA
    ATTGAACATGAGGCAGATATTTTCGCCTCTGAATTTTTACTACCTGAAGAAGCGTTTAAA
    AAAGACTTTGATCAAATGACCAAAAAATCAAATCCTGATTATTTAGCTGTATTGAAAGAA
    AAATGGTATGTTTCTATACAAGCAATTGCAATGAGAGCTTATTATCTAGGCCTAATGTCT
    AGTACTCAGTACAGATATTTTTGGGCATCATTAAATAAAAAAGGCTATAAAAGTAAAGAG
    CCTTTAGACGACGTGATTGAAATGTCACGTCCTGTCAAAATGAATAGTTTATTAAAGTTG
    TATTTTGATAGAAATATACTGACACCACAAAAATTATTGAATTATTTAAAAGTCGATGAA
    ACATTTTTGAATCATCTAGCAGGTATTAATTTAAAACTCTTTAAGGATTATGTTAATGAA
    AATAGAGAATATAATATAACGAATCTATATAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1176

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA0142 [new locus tag: SA_RS00880 ]
  • symbol: SA0142
  • description: hypothetical protein
  • length: 391
  • theoretical pI: 8.77399
  • theoretical MW: 45913.6
  • GRAVY: -0.334271

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    putative zinc finger/helix-turn-helix protein, YgiT family (TIGR03830; HMM-score: 14.2)
    Hypothetical proteinsConservedTIGR00270 family protein (TIGR00270; HMM-score: 13.6)
    Signal transductionRegulatory functionsDNA interactionstranscriptional regulator, y4mF family (TIGR03070; HMM-score: 13.5)
  • TheSEED:  
    Zn peptidase with DNA binding 
  • PFAM:
    Peptidase_MA (CL0126) Peptidase_M78; IrrE N-terminal-like domain (PF06114; HMM-score: 68.3)
    HTH (CL0123) HTH_3; Helix-turn-helix (PF01381; HMM-score: 28.2)
    HTH_19; Helix-turn-helix domain (PF12844; HMM-score: 20.8)
    HTH_11; HTH domain (PF08279; HMM-score: 18.8)
    Peptidase_MA (CL0126) Peptidase_U49; Peptidase U49 (PF10463; HMM-score: 16.8)
    no clan definedFAM178; Family of unknown function, FAM178 (PF14816; HMM-score: 14.4)
    Sigma70_r1_1; Sigma-70 factor, region 1.1 (PF03979; HMM-score: 13.3)
    HTH (CL0123) HTH_24; Winged helix-turn-helix DNA-binding (PF13412; HMM-score: 12.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.144
    • Ymax_pos: 14
    • Cmax: 0.107
    • Cmax_pos: 25
    • Smax: 0.249
    • Smax_pos: 11
    • Smean: 0.207
    • D: 0.169
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSYFISEQPEELLINSVDKHSIAFRAKNYKVSTKLLNKQYYQAMYLSNLTSYLFSFVTIPDNIILSLINNLDELLNGNLESLNKKESIKEIAKVVRAKILQDESNEALLFMLEKAGIVIYEKRINDSIDAYSFWSKDQTPFIILGTNRGVAVRRNFDLAHELGHLVLHRHIQFDLLSPEEYKTIEHEADIFASEFLLPEEAFKKDFDQMTKKSNPDYLAVLKEKWYVSIQAIAMRAYYLGLMSSTQYRYFWASLNKKGYKSKEPLDDVIEMSRPVKMNSLLKLYFDRNILTPQKLLNYLKVDETFLNHLAGINLKLFKDYVNENREYNITNLYK

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]