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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1795 [new locus tag: SA_RS10310 ]
  • pan locus tag?: SAUPAN005104000
  • symbol: SA1795
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1795 [new locus tag: SA_RS10310 ]
  • symbol: SA1795
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2038939..2040882
  • length: 1944
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    ATGAAAATAAATAAGTTAACTATATCGAACTTTGCTGGAATCAAAGAAGAAAAATTTAAC
    TTTGACGGTAAAGATGCAAAAATATACGGCAATAATGCGACTGGCAAGACTACAACAGCA
    ACCGCATTACAATGGCTGCTTTTCGATAAGGGTTTAGACGGTTCAACCAAATCATTTAAC
    CCTGTACCTTTAAACGAAAAAAACGAAGAAAATTATGAGTTAATTCCGACTGTTTTCGCA
    GAATTTGAAATCGACGGAAAAATTACGACTTTTAAAAAAGAGTCACATCCTAAGTACACA
    ATAAATCAAAAAACGAATCGCAAGGAATACTCACGAAGTCGAACGAAGAAACAATATATC
    AATGATGAATCAATAAAAGTAAAGGATTATAAAGCTCGTATTGATGAACTGATTGATGAA
    GATGTATTCAAGTTAATTACGAACCCTCAAGCATTTAACTTACTAGATTGGAAGAAACGA
    AGAAGTTTGTTGTTTGAAATCGCTAAACCAATCAATGATGAGGATGTCATTAAAACAAAT
    GATGATTTTAAAGAACTAAATAATATTCTTGGAGATCACGAAATTGAAACAAAGAAAAAG
    ATTCTTACAGACAAGATAAAACAGATTAACAAAGATATCAAAGATATTCCGATACGTATT
    AACCAAACGCAACAAAATAAGCAGGATGTACCGGAATTCGATAATGATAGACACACAATC
    ATAAAACAAGAAATTGAGCAACTTGAAAATGAGCGTATAGATATTCAAAACGGTGCAGAA
    GAAATTAATTTGCGTAACCAATTAGCTGATAAACAATCAGAATTGAAGCGCATAGAAGCT
    AATAATAGCGCCAGTAATGAGAACAAAATACATGCTTTAACAAATGAGCTACACGTTGAA
    AATGGAACGGTTGCGAATCTTAAAACAAGATTAAAGCAAAACAAACAACAAATTACACAT
    GAAGAAAATCGACGTAATCAATTATTAGAAAATCATAAAGGATTAAAAAGTGATTTAGAA
    AAAGCTAAAAATCAAAAATTTGAATATCTTGATGACAATGTATGTAGTTGTTGTGGTCAA
    CAGTTACCAGCTGAACAAGTGAGTGAGGTAAGAGAAAAAGCATTGCAGAAATTCAATGCA
    AACAAATCGAAAGAATTAGAAACAATACAAACATCTATCAATCACATTATTTCAGAGGGC
    AAGAAAATAAAGCCAATTATCGAGAAATTAGAGGATGACAACAATAATTTACAAATTAAA
    ATCAACGAAGCAGAAGAGCGTTCAGCAAGAATACAAAACAAAATTAATAAGTTGAAAATA
    ACTCACGTTGACGTTACGCAAACTGACGAATACAAAGCAGTAATGTTAGAGATAAATGAG
    ATTAATCAAAAACGCTCTAACATCAGGAAAACTATTCAAGATAAAGTTTCAGGAATAGAT
    GACAAAATAAGCGAACTTACTCAAGAAAAATCAGAAATTGAAGTGTCAATATCAATCGAA
    AAATCAAATAAACATCTAGATGATGTTATTTCTGAATTAAGAAATGAAGAAGACAGATTA
    TTGGATGAAAAAGAAAAGTATTCACATGACCTTTATATCTTAAAAGAATTTACAACAACA
    AAAGTCAAAATGCTTACTGAAAACATCAATAACGAATTTGATATTGCTGAATTTAAGCTA
    TTCAATACCTTAGTTAACGGCGAATTAGAAGAAACATGTTCAACAACGGTTAATGGTGTC
    GAGTATGACAGCGGTTTAAATAACGCCTCAAGAATTAATGTTGGCTTAGATATCATCAAC
    ACACTATCAAAACATTTTAAAGTTACAGCGCCAATATTTATTGATAATGCTGAATCAGTA
    ACAGAGCTTATCAAAACAGAATCACAACAAATTCAATTGATAGTAAATGAACAAGATAAA
    AAATTAAGAATGGAGACTATATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1944

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1795 [new locus tag: SA_RS10310 ]
  • symbol: SA1795
  • description: hypothetical protein
  • length: 647
  • theoretical pI: 5.47733
  • theoretical MW: 74916.8
  • GRAVY: -0.866151

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02168; HMM-score: 14.5)
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02169; HMM-score: 6.1)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02169; HMM-score: 6.1)
    Signal transductionRegulatory functionsDNA interactionsCu(I)-responsive transcriptional regulator (TIGR02044; HMM-score: 5.7)
  • TheSEED:  
    ATPase involved in DNA repair, phage associated 
  • PFAM:
    P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 25.6)
    AAA_27; AAA domain (PF13514; HMM-score: 22.6)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 18.3)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 14.6)
    no clan definedGIT_CC; GIT coiled-coil Rho guanine nucleotide exchange factor (PF16559; HMM-score: 13.4)
    P-loop_NTPase (CL0023) AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 9.4)
    Reo_sigma (CL0326) Reo_sigmaC; Reovirus sigma C capsid protein (PF04582; HMM-score: 8.7)
    no clan definedCyc-maltodext_N; Cyclomaltodextrinase, N-terminal (PF09087; HMM-score: 8.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.148
    • Ymax_pos: 18
    • Cmax: 0.109
    • Cmax_pos: 55
    • Smax: 0.246
    • Smax_pos: 5
    • Smean: 0.2
    • D: 0.169
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTTATALQWLLFDKGLDGSTKSFNPVPLNEKNEENYELIPTVFAEFEIDGKITTFKKESHPKYTINQKTNRKEYSRSRTKKQYINDESIKVKDYKARIDELIDEDVFKLITNPQAFNLLDWKKRRSLLFEIAKPINDEDVIKTNDDFKELNNILGDHEIETKKKILTDKIKQINKDIKDIPIRINQTQQNKQDVPEFDNDRHTIIKQEIEQLENERIDIQNGAEEINLRNQLADKQSELKRIEANNSASNENKIHALTNELHVENGTVANLKTRLKQNKQQITHEENRRNQLLENHKGLKSDLEKAKNQKFEYLDDNVCSCCGQQLPAEQVSEVREKALQKFNANKSKELETIQTSINHIISEGKKIKPIIEKLEDDNNNLQIKINEAEERSARIQNKINKLKITHVDVTQTDEYKAVMLEINEINQKRSNIRKTIQDKVSGIDDKISELTQEKSEIEVSISIEKSNKHLDDVISELRNEEDRLLDEKEKYSHDLYILKEFTTTKVKMLTENINNEFDIAEFKLFNTLVNGELEETCSTTVNGVEYDSGLNNASRINVGLDIINTLSKHFKVTAPIFIDNAESVTELIKTESQQIQLIVNEQDKKLRMETI

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]