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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1808 [new locus tag: SA_RS10390 ]
  • pan locus tag?: SAUPAN005162000
  • symbol: SA1808
  • pan gene symbol?:
  • synonym:
  • product: ss-1,3-N-acetylglucosaminyltransferase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1808 [new locus tag: SA_RS10390 ]
  • symbol: SA1808
  • product: ss-1,3-N-acetylglucosaminyltransferase
  • replicon: chromosome
  • strand: +
  • coordinates: 2047184..2048167
  • length: 984
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGAAAAAAGTAAGTGTTATAATGCCAACATTCAATAACGGCGAAAAATTACATAGAACC
    ATTAGTTCTGTATTAAATCAAACAATGAAGAGTACTGATTACGAATTAATTATTATTGAT
    GATCATTCAAATGACAATGGTGAGACTTTGAATGTTATAAAAAAATATAAAGGATTAGTT
    CGTTTTAAACAATTAAAAAAGAATAGTGGAAATGCTAGCGTACCTAGAAATACAGGCTTA
    AAAATGAGCAAAGCTGAATATGTATTCTTTTTAGATTCTGATGATTTACTTCACGAAAGA
    GCACTAGAAGATTTATATAATTACGGCAAAGAAAATAATAGCGATTTAATAATTGGAAAA
    TATGGAGTTGAAGGTAAAGGAAGAAGTGTTCCTAAAGCTATATTTGAGAAAGGAAATGTA
    GCGAAAGCTGATATTATTGATAATAGTATTTTTTATGCTTTATCAGTACTAAAAATGTTT
    AAAAAAAGTGTTATAGATAAAAACAAGATAAAATTCAAAACATTCTCTAAAACTGCTGAA
    GACCAATTATTTACTATAGAATTTTTGATGAATTCGAAAAATTACTCGATAAAAACCGAC
    TATGAATACTATATTGTAGTCAACGATTTCGAGTCTAGCAATCATTTGTCAGTAAATAAA
    AGTACAGGAAATCAATATTTTGCTACTATAAACGAAATTTATAAAGCTATTTATAAAAGT
    CCAATTTATAAAAACCAAGAAAAAAGACACCAACTTGCCGGGAAGTATACAACTAGACTT
    TTAAGACACGGTCAGAAAAAGAATTTTGCAAATAGTAAAATGAAATATGAAGATAAAATC
    GAATGGTTAAACAACTTTTCTAAAACAATTAATAAAGTACCTAGAGACTCAGATAAATAT
    GTCACACAAATATTCAACTTAAAATTAGAAGCAATAAGACAAAACGATTTATTAGCTGTG
    ATGATTGCAGATAAGCTATTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    984

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1808 [new locus tag: SA_RS10390 ]
  • symbol: SA1808
  • description: ss-1,3-N-acetylglucosaminyltransferase
  • length: 327
  • theoretical pI: 10.0446
  • theoretical MW: 37812.1
  • GRAVY: -0.576147

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 57.2)
    mycofactocin system glycosyltransferase (TIGR03965; HMM-score: 45.5)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 36.7)
    colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 36.3)
    Unknown functionEnzymes of unknown specificitytransferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 35.5)
    colanic acid biosynthesis glycosyltransferase WcaE (TIGR04009; EC 2.4.-.-; HMM-score: 32.8)
    chitooligosaccharide synthase NodC (TIGR04242; EC 2.4.1.-; HMM-score: 26.4)
    glycosyltransferase, TIGR04182 family (TIGR04182; HMM-score: 20.7)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 20.5)
  • TheSEED:  
    glycosyl transferase 
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 86)
    Glyco_tranf_2_2; Glycosyltransferase like family 2 (PF10111; HMM-score: 37.1)
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 36.4)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 16.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.183
    • Ymax_pos: 18
    • Cmax: 0.109
    • Cmax_pos: 31
    • Smax: 0.459
    • Smax_pos: 12
    • Smean: 0.312
    • D: 0.233
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MKKVSVIMPTFNNGEKLHRTISSVLNQTMKSTDYELIIIDDHSNDNGETLNVIKKYKGLVRFKQLKKNSGNASVPRNTGLKMSKAEYVFFLDSDDLLHERALEDLYNYGKENNSDLIIGKYGVEGKGRSVPKAIFEKGNVAKADIIDNSIFYALSVLKMFKKSVIDKNKIKFKTFSKTAEDQLFTIEFLMNSKNYSIKTDYEYYIVVNDFESSNHLSVNKSTGNQYFATINEIYKAIYKSPIYKNQEKRHQLAGKYTTRLLRHGQKKNFANSKMKYEDKIEWLNNFSKTINKVPRDSDKYVTQIFNLKLEAIRQNDLLAVMIADKLL

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]