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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 26-AUG-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1835 [new locus tag: SA_RS10530 ]
  • pan locus tag?: SAUPAN005255000
  • symbol: int
  • pan gene symbol?: int
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SA1835 [new locus tag: SA_RS10530 ]
  • symbol: int
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2071100..2072272
  • length: 1173
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGGCAAGTTATGAAAAACGCGGAAATACATGGCGCTATCGTATATCACTAGGAAAAGAC
    GCAGAAACGGGCAAATATAAATATATTTCAAACTCAGGTTTTAAACGCAAATCAGACGCT
    AAACATCACGCTGAAATGGTTGAGCGTCAATTAAGAAATGGCGATTATATCGCACCGTCC
    ACATCTACATTTAAACAGGTTGCTGACGATTGGATATCACAATATGCTAACGAAGTAAAA
    GTAAGTAGTGTCAGAGCACGCGAGAAAGCCATACATCATGCTATAGAACGCTTTAAGAAC
    AAACCAATACAAACTATCAAAAAACACGATTATCAACGTTTTGTAAACGATATAAGCATA
    CAGTATAGCAAGAATTATGTTGATAGCATTGTAACCTCTACAAATATGATATTTAAGTAC
    GCTTATGATATGAAATTAATAAGAATATTGCCTAGCGAGGGTATTAAACGACCTAAAAAG
    AAAGTTAGTGTGGAAGAATTAGAAGATACTGAGATACATAAAAAGTTTCTTGAAAAAGAT
    GAATTATTTCAATTTCTGGAAATTGCCAAAAATCACCATTCGCCACAAAATAGCTTTGAA
    GTGTTTTATACATTAGCATATACAGGCATGCGTGCAGGTGAATTATTGGCATTGAAGTGG
    TCTGATATAGACTTTGAGAATAACACAATCAATATTACAAAGACTTATTACAATCCGAAT
    AACAATAAAAAGCAATATCAAATACTTACGCCAAAAACTGAAAGCTCAATCGGAAAAATT
    TCAGTTGATCCTCATGTGATTAAATTACTCAAAAATTATAAAGTGGATGTACAGGACACA
    TGGAAAAACGAGTTGTATGTAGATAACAATTTCGTTTTTACTGATGTTAACGGCTATCCC
    CTCGTAATTAAGAAACTACAGTTATGGATAAAAGCTATACTTAAAAAGACTAACATAACT
    AATAAACAAATAAGCACTCATTCATTTCGTCATACTCATTGCGCGTTACTTATAGAGGCT
    GGTGTGCATATTAAGGAAATACAAGAACGCTTGCGACACAAAGATATAAACACCACTATG
    AACATCTACGCTAAGATTACGAACTCATACAAAAAAGACGCTTCCCAAAAGTTTAGTAAA
    CTCATGGAAAACGTCTCAAAAGATTTATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1173

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SA1835 [new locus tag: SA_RS10530 ]
  • symbol: Int
  • description: hypothetical protein
  • length: 390
  • theoretical pI: 10.0764
  • theoretical MW: 45743
  • GRAVY: -0.688205

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerC (TIGR02224; HMM-score: 69)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerD (TIGR02225; HMM-score: 67.7)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairintegron integrase (TIGR02249; HMM-score: 56.3)
    Genetic information processingMobile and extrachromosomal element functionsOtherintegron integrase (TIGR02249; HMM-score: 56.3)
  • TheSEED:  
    Phages, Prophages, Transposable elements, PlasmidsPathogenicity islandsStaphylococcal pathogenicity islands SaPI Integrase, superantigen-encoding pathogenicity islands SaPI 
  • PFAM:
    DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 101.2)
    l-integrase_N (CL0469) Phage_int_SAM_3; Phage integrase, N-terminal SAM-like domain (PF14659; HMM-score: 41.2)
    MBD-like (CL0081) Arm-DNA-bind_4; Arm DNA-binding domain (PF14657; HMM-score: 35.9)
    no clan definedFRB_dom; FKBP12-rapamycin binding domain (PF08771; HMM-score: 13.4)
    DUF4907; Domain of unknown function (DUF4907) (PF16250; HMM-score: 12.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.134
    • Ymax_pos: 11
    • Cmax: 0.113
    • Cmax_pos: 41
    • Smax: 0.292
    • Smax_pos: 1
    • Smean: 0.154
    • D: 0.142
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 15927603 NCBI
  • RefSeq: NP_375136 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQYSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]