NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0051 [new locus tag: SACOL_RS00270 ]
- pan locus tag?: SAUPAN000667000
- symbol: SACOL0051
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL0051 [new locus tag: SACOL_RS00270 ]
- symbol: SACOL0051
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 61982..63598
- length: 1617
- essential: unknown
⊟Accession numbers[edit source | edit]
- Gene ID: 3236891 NCBI
- RefSeq: YP_184961 NCBI
- MicrobesOnline: 911535 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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1561ATGGAATTTGAACATAAATTAGAGAAATTAATATCTGAAGTAAATAATAAGACTGAAATT
AATAATTATGTTTTTTTTAGTTTAGGTAAGTCAAGTGTTAAAGCACAGGTTAAGTTATTA
AAAAAAACTAATTATCTCAAACAAGATATTTCAAAATTGGCACTTAAATTTAAAAAGAAA
TCTGGGGAATTTCCTGAGTGGATTAAATTAGATATTGTAACCTCGACTGAAAAAATATTA
TTTAAAGAATTAAAAAAAACACTGATCAATACAAGAAGAAATTATGTAGATTTTGGTATA
GCATTTGATAGTCAATGGAATTTTGCAGTATTACCTGAAGAAATTAACGCGAATGCTTTT
GTTCGACCAGATAATACTACTAAAGAGTTATTTCTTTCGGAAAAAAACATCAATAATTAT
TTACGCAAATATACTACAAATAAAAAGGCATTTTCTAGTGAGTTCTATAATGAAAAAGAA
GTTATTAAATTCTATACACAAGGTTTCTTTATAGGTGATGAAGAAGTACATGAACTATAT
AGCGAAGGCTATAAAAAAGGTTTAAGAAAAGTAAATGATTTAAATAATGAAATTGATCAA
TTAATTGAAAGTAGTACTAATTTCTTACAAAATATGTTGTTAGATAATGGTAAATATATT
TATGGATATTTTCCTCATTTTGATAATGAAATTGGATTCTACAATGTTTTAAGACACTCT
TCTTCTACTTATGCCTTAATTGAGGGTCTGTCCTATTTAGGTAAAAGCTTACAACCTGTT
GAAAAAGCAATTGATTATATCATTTTAAATCAACTGTTTGAGATTGGTGATAAAGCCTAT
ATCTTTGATGATACAGAGGAAGCAAATGAAATCAAATTAGGACAAAATGCTTCATTTATA
TTCGCAGTTTGTGAATATTTAAAGCATGAAGATAATCCTAAATTTCTTGAGTCAGCTCAG
AAAGTGGCTAAAGGTATTCTTTCAATGATAGATGAAGATACATATGAGACAACTCACTTA
TTGAATTATCCTGATTTAAGCGTAAAAGAGAAGTTTAGAATTATTTATTACGATGGTGAA
GCAGCGCTTGCTTTATTGAGATTGTATCAAAAGGATGAAAATGAACTATGGCTAAAAACT
GTAGAAAATTTGATGGACCGTTTCATTGAGAAGAAATATTGGCAATATCATGATCATTGG
TTAGGATATTGTACGAATGAATTAGTTCAAATTAATCCACAAGACAAATATTTTGAATTT
GGAATCAAAAATGTGAATAATTACTTAGATTATATTAAAAATCGTGAAACAACATTTCCA
ACATTCTTAGAAATGTTAATGGCCACATATAGATTAGTTCAAAAAGCGAAAGATACGGGT
CGCGAGGAATTGGTAAACAATTTAATAGATGAACAATATTTGATAGATGTAATTAATATT
AGAGCAGATTATCAAAGAGTTGGATTCTTTTATCCTGAAATTGCTATGTATTTTAAAAAC
CCATCAAGAATACTAGGAAGTTTCTTTATTAAACACCACGGTTATCGTGTTCGAATTGAT
GATATCGAACATTATTTATCTGGATATGTACAATATCAGCTTGCATTTAATAGGTAA60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL0051 [new locus tag: SACOL_RS00270 ]
- symbol: SACOL0051
- description: hypothetical protein
- length: 538
- theoretical pI: 5.87664
- theoretical MW: 63743
- GRAVY: -0.479182
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: PKinase (CL0016) Alpha_kinase; Alpha-kinase family (PF02816; HMM-score: 11.5)no clan definedArAE_1_C; Putative aromatic acid exporter C-terminal domain (PF11728; HMM-score: 10.3)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.124
- Ymax_pos: 36
- Cmax: 0.129
- Cmax_pos: 36
- Smax: 0.238
- Smax_pos: 34
- Smean: 0.103
- D: 0.116
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MEFEHKLEKLISEVNNKTEINNYVFFSLGKSSVKAQVKLLKKTNYLKQDISKLALKFKKKSGEFPEWIKLDIVTSTEKILFKELKKTLINTRRNYVDFGIAFDSQWNFAVLPEEINANAFVRPDNTTKELFLSEKNINNYLRKYTTNKKAFSSEFYNEKEVIKFYTQGFFIGDEEVHELYSEGYKKGLRKVNDLNNEIDQLIESSTNFLQNMLLDNGKYIYGYFPHFDNEIGFYNVLRHSSSTYALIEGLSYLGKSLQPVEKAIDYIILNQLFEIGDKAYIFDDTEEANEIKLGQNASFIFAVCEYLKHEDNPKFLESAQKVAKGILSMIDEDTYETTHLLNYPDLSVKEKFRIIYYDGEAALALLRLYQKDENELWLKTVENLMDRFIEKKYWQYHDHWLGYCTNELVQINPQDKYFEFGIKNVNNYLDYIKNRETTFPTFLEMLMATYRLVQKAKDTGREELVNNLIDEQYLIDVINIRADYQRVGFFYPEIAMYFKNPSRILGSFFIKHHGYRVRIDDIEHYLSGYVQYQLAFNR
⊟Experimental data[edit source | edit]
- experimentally validated: PeptideAtlasquantitative data / protein copy number per cell: 442 [4]
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SACOL0051 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
⊟Protein stability[edit source | edit]
- half-life: 23.35 h [5]
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
- ↑
Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS ONE: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑
Kristina Hempel, Florian-Alexander Herbst, Martin Moche, Michael Hecker, Dörte Becher
Quantitative proteomic view on secreted, cell surface-associated, and cytoplasmic proteins of the methicillin-resistant human pathogen Staphylococcus aureus under iron-limited conditions.
J. Proteome Res.: 2011, 10(4);1657-66
[PubMed:21323324] [WorldCat.org] [DOI] (I p) - ↑
Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int. J. Med. Microbiol.: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p) - ↑
Daniela Zühlke, Kirsten Dörries, Jörg Bernhardt, Sandra Maaß, Jan Muntel, Volkmar Liebscher, Jan Pané-Farré, Katharina Riedel, Michael Lalk, Uwe Völker, Susanne Engelmann, Dörte Becher, Stephan Fuchs, Michael Hecker
Costs of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis.
Sci Rep: 2016, 6;28172
[PubMed:27344979] [WorldCat.org] [DOI] (I e) - ↑
Stephan Michalik, Jörg Bernhardt, Andreas Otto, Martin Moche, Dörte Becher, Hanna Meyer, Michael Lalk, Claudia Schurmann, Rabea Schlüter, Holger Kock, Ulf Gerth, Michael Hecker
Life and death of proteins: a case study of glucose-starved Staphylococcus aureus.
Mol. Cell Proteomics: 2012, 11(9);558-70
[PubMed:22556279] [WorldCat.org] [DOI] (I p)
⊟Relevant publications[edit source | edit]