Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
- pan locus tag?: SAUPAN003651000
- symbol: SACOL1339
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
- symbol: SACOL1339
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1352650..1353075
- length: 426
- essential: unknown other strains
⊟Accession numbers[edit source | edit]
- Gene ID: 3236285 NCBI
- RefSeq: YP_186193 NCBI
- MicrobesOnline: 912799 MicrobesOnline
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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421ATGATACCAGGTGTGAATGCGCCACCTATGCATCCTTGGTGTAGAAGTACCACAGTGCCA
CATGTCGGCAATTGGCGAGACAAGTTCTTTAAAGAGCGTGAAGGTAAATATCAAGTAGAA
GGTTGTTTTATTGAATCAGGTGCACTTAATAATAAAAGTGATGAATACGGTATCAAAAGG
AACAGACATGCTCAAATTTATTATAATTCAGTTAGAAATCGAGATAAACAGATAGAGATT
TCTAAAATTGCTAAAAATACTAATATAAATAAAAATTTAATTCAAAGAGTTTATGAACAT
ATATTTGAAAATAAGTATTTATTAGAAAGTGGATTTAAACAATTTGATCCTGACTTTTAT
ATGGCTCAAAGTTGGCAACGTTTAAGAGAAGGGAAAAATATTAAAAAAATGGATATAATA
ATGTAG60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
- symbol: SACOL1339
- description: hypothetical protein
- length: 141
- theoretical pI: 10.0068
- theoretical MW: 16817.1
- GRAVY: -0.885816
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: Mobile and extrachromosomal element functionsProphage functionsphage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 18.4)
- TheSEED:
- PFAM: no clan definedDUF4496; Domain of unknown function (DUF4496) (PF14908; HMM-score: 15.6)DUF4060; Protein of unknown function (DUF4060) (PF13269; HMM-score: 13.7)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular Possibility: 1
- Signal Peptide Possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- Ymax: 0.172
- Ymax_pos: 16
- Cmax: 0.116
- Cmax_pos: 58
- Smax: 0.408
- Smax_pos: 6
- Smean: 0.257
- D: 0.205
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MIPGVNAPPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIYYNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQRLREGKNIKKMDIIM
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- MicrobesOnline: SACOL1339 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]