NCBI: 10-JUN-2013

⊟Summary

• organism: Staphylococcus aureus COL
• locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
• pan locus tag^?: SAUPAN003651000
• symbol: SACOL1339
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
• symbol: SACOL1339
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 1352650..1353075
• length: 426
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 3236285 NCBI
• RefSeq: YP_186193 NCBI
• MicrobesOnline: 912799 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGATACCAGGTGTGAATGCGCCACCTATGCATCCTTGGTGTAGAAGTACCACAGTGCCA
  CATGTCGGCAATTGGCGAGACAAGTTCTTTAAAGAGCGTGAAGGTAAATATCAAGTAGAA
  GGTTGTTTTATTGAATCAGGTGCACTTAATAATAAAAGTGATGAATACGGTATCAAAAGG
  AACAGACATGCTCAAATTTATTATAATTCAGTTAGAAATCGAGATAAACAGATAGAGATT
  TCTAAAATTGCTAAAAATACTAATATAAATAAAAATTTAATTCAAAGAGTTTATGAACAT
  ATATTTGAAAATAAGTATTTATTAGAAAGTGGATTTAAACAATTTGATCCTGACTTTTAT
  ATGGCTCAAAGTTGGCAACGTTTAAGAGAAGGGAAAAATATTAAAAAAATGGATATAATA
  ATGTAG
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  426
  

⊟Protein

⊟General

• locus tag: SACOL1339 [new locus tag: SACOL_RS06815 ]
• symbol: SACOL1339
• description: hypothetical protein
• length: 141
• theoretical pI: 10.0068
• theoretical MW: 16817.1
• GRAVY: -0.885816

⊟Function

• TIGRFAM:
  Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage head morphogenesis protein, SPP1 gp7 family (TIGR01641; HMM-score: 18.4)
• TheSEED:  
  FIG01108200: hypothetical protein 
• PFAM:
  no clan definedDUF4496; Domain of unknown function (DUF4496) (PF14908; HMM-score: 15.6)
  DUF4060; Protein of unknown function (DUF4060) (PF13269; HMM-score: 13.7)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular Possibility: 1
  • Signal Peptide Possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • Ymax: 0.172
  • Ymax_pos: 16
  • Cmax: 0.116
  • Cmax_pos: 58
  • Smax: 0.408
  • Smax_pos: 6
  • Smean: 0.257
  • D: 0.205
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 57650309 NCBI
• RefSeq: YP_186193 NCBI
• UniProt: A0A0H2WX04 UniProt

⊟Protein sequence

• MIPGVNAPPMHPWCRSTTVPHVGNWRDKFFKEREGKYQVEGCFIESGALNNKSDEYGIKRNRHAQIYYNSVRNRDKQIEISKIAKNTNINKNLIQRVYEHIFENKYLLESGFKQFDPDFYMAQSWQRLREGKNIKKMDIIM

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SACOL1339 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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