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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1573 [new locus tag: SACOL_RS14725 ]
  • pan locus tag?: SAUPAN004084000
  • symbol: SACOL1573
  • pan gene symbol?:
  • synonym:
  • product:

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: pseudogene
  • locus tag: SACOL1573 [new locus tag: SACOL_RS14725 ]
  • symbol: SACOL1573
  • product:
  • replicon: chromosome
  • strand: -
  • coordinates: 1608121..1609141
  • length: 1021
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAAAAAAGAAAAAAACGTAAAGAATTAGATTATAAAACACGTCTAGCTATCGCAAAG
    TATTTAAATGATGGTTTAAACATCATTCAGATTTCTAAGATTTTAGGTCGTGATGATGCG
    GTTCTTTATAGAGAAGTAAATAAGCGTTCTGTTGATGGTGTTTATAATCCTTTATTAGCT
    GAGGAAGATGCTATAAAATCGCGTAGTATTTCAGATGAACAAGTTGCTAAACGTAGACGT
    TTGAATGATGAAACAAAAGCATATATTGAAGAAAAACTTTCATTAAAATGGTCTCCTAGA
    CAGATAGCAAGTCAAATTGAAAAAGATACAGGGCATTATATAAGTTATCCTACTATATAT
    AGATATATTCGCAATGGATTGGTAAAAGTTGATGTTAAGCGTGATATGAGACAAGCAGGC
    AAAAAATATAATAAGTCTTCTGAAAAGCGTGGCAAATTAGACGTAGGGGCTCGTGTTATA
    AAGTATCGGCTCAAAAAGTATTAATAACCGTGAAGAATTTGGACATTATGAAATTGATAC
    TGTTTGGAGTGTTAGACCATCAACATATTGCTTGTTAACTATTATTGAAAGAAAAACAAG
    ATATTTATATGCTAGTAGATTAAATACACGTAAATCCAATGTAGTTTGTAATGAGATTAT
    AAATATTATGAAACCATTATTACCAAAAAGCATAACTATGGATAGAGGTAAGGAGTTCGC
    TCTATTTGAACAAATAGAAGATGAATTGAATTGTAGTATTTATTTTAGTGATTTGGGTTG
    TCCATATCAACGTGGTTCCATTGAAAATGTAAATGGACTTTTAAGACAGTATTATCCTAA
    AGGTACGGATTTTGCAAATATAACACAAAAGTCATTAGATGAAGCTGTTAAACAAATTAA
    TACACGGCCTCGAATGATATTTGACTATAAATCGAGTGAGGAAATGTTAAAGTACCATGT
    AAGCACACAAAATTGTGAACCTATATTAAATGACTGTGTGAGGCACGAACCCGTCAATTA
    A
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1021

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL1573 [new locus tag: SACOL_RS14725 ]
  • symbol: SACOL1573
  • description:
  • length: 0
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit source | edit]

  • GI:
  • RefSeq:
  • UniProt:

Protein sequence[edit source | edit]

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: 7.37 h [1]

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Stephan Michalik, Jörg Bernhardt, Andreas Otto, Martin Moche, Dörte Becher, Hanna Meyer, Michael Lalk, Claudia Schurmann, Rabea Schlüter, Holger Kock, Ulf Gerth, Michael Hecker
    Life and death of proteins: a case study of glucose-starved Staphylococcus aureus.
    Mol. Cell Proteomics: 2012, 11(9);558-70
    [PubMed:22556279] [WorldCat.org] [DOI] (I p)

Relevant publications[edit source | edit]