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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 10-JUN-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2172 [new locus tag: SACOL_RS14875 ]
  • pan locus tag?: SAUPAN005574000
  • symbol: SACOL2172
  • pan gene symbol?:
  • synonym:
  • product:

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: pseudogene
  • locus tag: SACOL2172 [new locus tag: SACOL_RS14875 ]
  • symbol: SACOL2172
  • product:
  • replicon: chromosome
  • strand: +
  • coordinates: 2253786..2255410
  • length: 1625
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGTATAAAAATTATAACTTGATCCAACTTACACTACCAATAGAAACTTCTGTTAGAATT
    CCTCAAATTGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAA
    TTCGATAAATTCAGACATCATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAA
    ATCACCTTATATGCATATACTCAATCTGTATTTTCTGGTCGTAGAATAGAGAAATTACTT
    CATGACAGTATTCGAATGATGTGGTTAGCTCAAAATCAAACACCTTCTTATAAAACTATT
    AATCGTATTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATCCAGTTT
    CATAGTCAATGTTTAAAGCAAAATCTTATTGATGGTACAAAAGTAGAAGCTAATGCCAAT
    AGGTATACATTTGTGTGGAAGAAAAGTATTCAAAATCACGAATCGAAATTGAACGAAAAT
    TCAAAAACATTATATCGTGACTTAGTTGAAGAAAAAATAATACCAGAGATAAAAGAAGAT
    GGAGATAGCGATTTAACAATAGAAGAAATAGATTTAATTGGTAGTCATTTAGATAAAGAA
    ATCGAAGGTTTAAATCATTCTATTGAGAACGAAGATAGTACTCAAATTAGAAAACAGACC
    CGTAAAAAAGAACTAAGATTAAGAAGTTCAAAAATAAATTTGATGATTATTCCGAAAGAA
    AAAATAAATATGAAGAACAAAAATCGATTCTTAAAGATAGAAATAGCTTTTCTAAAACTG
    ATCATGATGCAACTTTTATGAGAATGAAGGAAGACCATATGAAAAATGGCCAACTTAAGC
    CAGGATACAATTTACAAATAGCGACAAATTCTCAATTTGTTTTATCCTATGACCTATTTC
    AAAACCCAACAGATACTAGAACTTTAATTCCATTTTTAACAATGATTCAAAATACCTTCG
    GTTATTTACCGGAGTATATTGTAGCTGATGCAGGTTATGGTAGTGAGCAAAACTATATGG
    CTATTATAGATGATTTTAATAAAACGCCACTTATTACGTATGGCATGTTTATTAAAGATA
    AAACTAGAAAGTTTAAAAGTGACATTTTCAACACTTAAAATTGGAAATATGACGAACTTA
    ATGATGAATTTATATGTCCTAATAACAAAAGAATAGGTTTTAAAAGATATGCATACCGTA
    ATGATAGATATGGTTTTAAACGAGACTTCAAACTATATGAATGTGATGACTGTTCATCAT
    GTTCTTTGAGACATCAATGCATGAAACCAAATTCGAAATCCAATAAGAAAATCATGAAGA
    ATTATAATTGGGAATACTTTAAAGTCCAAATTAATCAAAAGCTTTCTGAACCAGAAACGA
    AAAAAATCTATAGTCAAAGAAAAATTGATGTAGAGCCTGTTTTTGGATTTATGAAGGCTA
    TTTTGGGTTTCACTCGAATGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTT
    TTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAA
    TACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTG
    CCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1625

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL2172 [new locus tag: SACOL_RS14875 ]
  • symbol: SACOL2172
  • description:
  • length: 0
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb:
  • LocateP:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

Accession numbers[edit source | edit]

  • GI:
  • RefSeq:
  • UniProt:

Protein sequence[edit source | edit]

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]