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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS01365 [old locus tag: SACOL0269 ]
  • pan locus tag?: SAUPAN001173000
  • symbol: SACOL_RS01365
  • pan gene symbol?:
  • synonym:
  • product: DUF5080 domain-containing protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS01365 [old locus tag: SACOL0269 ]
  • symbol: SACOL_RS01365
  • product: DUF5080 domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 307973..308560
  • length: 588
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (307973..308560) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
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    541
    ATGATAATTTTTATTTTAATAACAATATTTGCTATTTATTATATAGCTATGATTGCTAGT
    TTGTTTAAAAGTGAAGGTTTTTCAATAATAGGTTTAATATTAGATGTTGTTATAATGGGG
    ACATTGATTTTTTACTATTTTATAGGCGCTCGCTTTGTTGATCATGATTTAAGCAACTTT
    TTAATGTTTATGGATACTGGATCATATATTTTTATGTACTTTGCAATTAAGTGTTTATGG
    GTGAAACCTAAGGTAGTAAATTATTTGATTGCAAAAGAATTGGGTGAATCTAAAGAGGTC
    ATTGAAGAGCAGGAATTAGATTTACAGACATCAAAGATAAGAGGTATCTACTTTTTCATT
    ATTTCAGTAGTGATGTTAATTATCACTAAATTAAGAATGCAACCTGAGTTACAGGCAGAT
    GCTATATCGATGAATCCTGTATTTATTTTTGTTGGTGTTATAATCATTTTAATTTGGCTA
    GTACTGGATATATATCGCAAGAAAAAATACGGTATATTCTTATTCAAGACGATAGTGCCA
    CTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAA
    60
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    588

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS01365 [old locus tag: SACOL0269 ]
  • symbol: SACOL_RS01365
  • description: DUF5080 domain-containing protein
  • length: 195
  • theoretical pI: 8.36398
  • theoretical MW: 22572.4
  • GRAVY: 1.10974

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cell structureCell envelopeOtherLPXTG cell wall anchor domain (TIGR01167; HMM-score: 9.3)
  • TheSEED:
  • PFAM:
    no clan definedDUF5080; Domain of unknown function (DUF5080) (PF16883; HMM-score: 290.7)
    DUF4199; Protein of unknown function (DUF4199) (PF13858; HMM-score: 10.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 5
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.095
    • Ymax_pos: 19
    • Cmax: 0.134
    • Cmax_pos: 19
    • Smax: 0.097
    • Smax_pos: 10
    • Smean: 0.07
    • D: 0.085
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

  • GI: 446505344 NCBI
  • RefSeq: WP_000583198 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MIIFILITIFAIYYIAMIASLFKSEGFSIIGLILDVVIMGTLIFYYFIGARFVDHDLSNFLMFMDTGSYIFMYFAIKCLWVKPKVVNYLIAKELGESKEVIEEQELDLQTSKIRGIYFFIISVVMLIITKLRMQPELQADAISMNPVFIFVGVIIILIWLVLDIYRKKKYGIFLFKTIVPLVVTTWIIIATIILS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS01365 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]