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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04545 [old locus tag: SACOL0885 ]
  • pan locus tag?: SAUPAN002841000
  • symbol: SACOL_RS04545
  • pan gene symbol?: int
  • synonym:
  • product: site-specific integrase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS04545 [old locus tag: SACOL0885 ]
  • symbol: SACOL_RS04545
  • product: site-specific integrase
  • replicon: chromosome
  • strand: -
  • coordinates: 903491..904711
  • length: 1221
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (903491..904711) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGTGGTTAGAAAAATTTAAAAATAAGAATAAAGAAACTAAATATAGATATTACGAGAAG
    TACAAAGACCCTCTCACTGCCAAATGGAGACGTGTTAGCGTGGTACTTAATAAGAATGGT
    AAGCAATCACAAAAAGAAGCTCAAAGACTCTTAAATGAGCGTATAGAAGCAAAACTGAAT
    GATAAGACACCTACTACACTTAAGTCACTAACTTTCCATGTCGCATGTGATGAGTGGTTT
    CAGAGTTATATCAAAACGTCTGGGTCAAAAAGAACAACTATTAAAACTAAATTGAGTAAG
    CTAAACACTTTGAAGAAATTTGTAGATGAAGATATTTTAATCAATAAAATAACACTTTCA
    TATGCGCAACAAGTTTTCGATGAAATGGATAATAAAGGTTATGTATATCAAGTAAACAAA
    GATGCGTTAAGCATATTCAAAAATGTATTTGAATACACTAGACGTATCTATAAACTGCAA
    GATTTAGAATTTTTAAAAGATATAACGTTAAATAAAAGAATTAAGTCTTATGATGAAGTG
    AAAGCTAAACGTAATAAGTACCTCGAATTAAATGAAATACAATCTATCATCAAAGATATT
    AATACGAAGGCTCAGAAGATGCACTCAGGTATCCATAAGCGGTTTTATTTATTCGTTGCA
    CTCATGACAGAATTCCAAGCCTTAAATGGTATGCGTATTGGTGAAATGTTAGCCATTCAA
    AATGAAGATATAGACTTTGATAATAAGAGTTTAAATATTAACGGAACAATCCATTGGTTT
    CACGATGAATCTGGTGGATTCGGTGTAAAAGATACCACTAAAACAGAGTCTAGTTATAGA
    ACAATTGGATTGAGTAGCAGAAGTTGCGAGATATTAAAGAAAGCAATACTGGAGAACAAA
    AAGGATTCAAAATGGAATGATGGATATCTAAATAGAAATTTTGTATTTACTAATCATAAA
    GGCAACCCAATGCAGACTGAAAGATTCAATAAAATCCTTAGGGAAGCAGCTAAAGATGTT
    GGTATTGATAAAGAAGTTTCTTCACATATATTAAGACATAGCCACATATCATTACTCTCT
    CAACAAGGCGTGTCACTTAAAGCTATTATGGATCGTGTAGGCCATTCCGACCACCGTACA
    ACACTTTCCATTTATTCTCACGTTACTGAACAGATGGATAAGGATATGATGAACAAACTT
    GAACAGGTAAAACTTGGATAA
    60
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    420
    480
    540
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    660
    720
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    840
    900
    960
    1020
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    1140
    1200
    1221

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS04545 [old locus tag: SACOL0885 ]
  • symbol: SACOL_RS04545
  • description: site-specific integrase
  • length: 406
  • theoretical pI: 10.1504
  • theoretical MW: 47586.3
  • GRAVY: -0.724384

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerD (TIGR02225; HMM-score: 79.1)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairtyrosine recombinase XerC (TIGR02224; HMM-score: 58.8)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairintegron integrase (TIGR02249; HMM-score: 58.7)
    Genetic information processingMobile and extrachromosomal element functionsOtherintegron integrase (TIGR02249; HMM-score: 58.7)
  • TheSEED:
  • PFAM:
    DNA-mend (CL0382) Phage_integrase; Phage integrase family (PF00589; HMM-score: 105.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.137
    • Ymax_pos: 48
    • Cmax: 0.117
    • Cmax_pos: 48
    • Smax: 0.242
    • Smax_pos: 42
    • Smean: 0.141
    • D: 0.138
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446188302 NCBI
  • RefSeq: WP_000266157 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHVACDEWFQSYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDNKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS04545 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]