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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS04600 [old locus tag: SACOL0896 ]
  • pan locus tag?: SAUPAN002856000
  • symbol: SACOL_RS04600
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS04600 [old locus tag: SACOL0896 ]
  • symbol: SACOL_RS04600
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 909068..909937
  • length: 870
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (909068..909937) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAATGAAATTAAATTGAAATATGATACGCAAGTTTCGGTGGTACATTATGAAAGTTTA
    GACTCACGTTCATTTAAGAGCTTTTCAATGCCTAAATGGAGTAAGTTGGTTAATAAACTG
    TCTGTGCCTATAGAAGCAAATTATAAGTATGCACGTGGTGTTGCTGTATATGGTGATATT
    AAAGACAATACAAATGATCATGGTGAAATTATCAAAAAGCATCGAAACGATAAAAATGTC
    ATATATAGAAATGTGATTGTACTTGATTACGATGAAATAAATGATGTAAAACAACTACAT
    GACGCAATCAGCTCAGTTTTAAGCAGTGTTGCATGGTATTGGCACACATCGTTTAGCCAT
    ACAACTGAACAAGCTAGAATACGCTTGTATATCCCTCTAAATGAGCGAATAAGTGCAGAT
    GATTATCGTAAATATACAAAAGTATTAGCAAATAAAATTGGCCATAAAGTGGATGAAGGT
    TCGTATCAGCCAAGTAGATGTTTTGCGTTACCAGTTATTCAAAAAGGACACATATTTATT
    AAGCGAGTGAATGACTGTCCAATTATGGATGTTGATATGCTCGAACAGTGGTCAAAGGAG
    TATAAACAATCAAATGGTAGTCCTAATATCAAAGGGTACACACGACGTGATAGTGCGTAT
    TGGCGAGATATAGCTTTTGGTGTAAGTGAGGGAGAGCGCAATTCAACATTGGCTTCAATT
    ACAGGTTATCTTTTGCGTAGGTATGTAGATCCAAACTTAGTTTATGGGTTAGTGAGTGCG
    TGGGCGAGTGTATGCAAACCACCTATTAATCAAAGTGAAGTAAATAATACTTTTAAAAGT
    ATTTTGAAAAAAGATAGTAAAAACAGTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
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    660
    720
    780
    840
    870

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS04600 [old locus tag: SACOL0896 ]
  • symbol: SACOL_RS04600
  • description: hypothetical protein
  • length: 289
  • theoretical pI: 9.5494
  • theoretical MW: 33332.5
  • GRAVY: -0.570934

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    DNA ligase D, polymerase domain (TIGR02778; HMM-score: 15)
    Cellular processesCellular processesChemotaxis and motilityflagellar biosynthetic protein FlhB (TIGR00328; HMM-score: 10.9)
  • TheSEED:
  • PFAM:
    no clan definedPriCT_1; Primase C terminal 1 (PriCT-1) (PF08708; HMM-score: 46.3)
    DMT (CL0184) DMT_6; Putative member of DMT superfamily (DUF486) (PF04342; HMM-score: 12.1)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.134
    • Ymax_pos: 37
    • Cmax: 0.115
    • Cmax_pos: 32
    • Smax: 0.202
    • Smax_pos: 51
    • Smean: 0.125
    • D: 0.131
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446925476 NCBI
  • RefSeq: WP_001002732 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MNEIKLKYDTQVSVVHYESLDSRSFKSFSMPKWSKLVNKLSVPIEANYKYARGVAVYGDIKDNTNDHGEIIKKHRNDKNVIYRNVIVLDYDEINDVKQLHDAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMDVDMLEQWSKEYKQSNGSPNIKGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKNS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS04600 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]