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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08060 [old locus tag: SACOL1582 ]
  • pan locus tag?: SAUPAN004100000
  • symbol: SACOL_RS08060
  • pan gene symbol?:
  • synonym:
  • product: conjugal transfer protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS08060 [old locus tag: SACOL1582 ]
  • symbol: SACOL_RS08060
  • product: conjugal transfer protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1617734..1618789
  • length: 1056
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1617734..1618789) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAAAATAATAAGCAAGTACATTTTAACACGATTTTCTAAAAACGGAAAGCATTTTGAT
    ATTCCTAAAGAACAACGCCGAGTAATTCCAAAATTTAAAAATCGTCGTAAGATGATTGTA
    ATTTGTTTTTACTCATTATTAGCTATTTTGTTAATTCTTTTATTAGCTTCTTTTATTAAA
    GCTACAAGAGCAAATAATGACAGTAAAGAAGCAGTTAATAAAACGAATATGATTCAAAAA
    AAGTATGAAGATAATGCGAATACAGTTCAGTATAGTCCTAAATTAAAGTTATATGCTGAT
    AAGTTTATTGATACGTATATGAATATCTCGAAAGATTCAAAAGAATTGGAATCTAGAGAA
    AAAGAATTGTTGAAATATTTTCCATCAGATTATAAAAAACCTGATGAAAAAATTTCAGAT
    ACAGAACGAAAATTGAATAGTAAAGAATTTTATAATATTAAACGTAAAGATAAACAAACA
    ATTATACAGTATATTGTTAATTATGATGTGAATATTACTGAAAAGAAAGAAGTTAAAGTT
    AAGAAGAAAAAGAAAAGTGAAAAAGATAAAGATGAGTATGAAACAAAAACAGAAGAAAAG
    CAACGTAAAGTAAATCAAAACATTTTAATAAATATACCTATTAAGAGTGAAAATAATAAG
    TATGTTGTTGTTGAATATCCTTATTTTACGCCAATCCCTGATAGTCAATTGAATAAAGCT
    AAAATGGTTGAGGATAATTTGAAAGACAATAAACGGGAAGACAATCCGAAAGCAAAAGCT
    TTTATTGAAGATTTCTTTAATAAATATGCTTCTAGTAAGTCTGATGATATGGCCTATTTA
    ATGGATAACCCTGAGGGCTTAGAAGGAACTAGAGAAGTTTCTCAGATAAGAGAAATTAGG
    TTATATCCAAAAGGCGATGATTATGTTGCTAAAGTTGAAATTTTGATGAAAGATAAAGAT
    TCTCCTTTGGAGAATTTGGAGCATTACACATTAGATATAACAAAAAAAGATGGTAAATAT
    TACGTTAAAAATATGACTAATTCTATTGGAGGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1056

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS08060 [old locus tag: SACOL1582 ]
  • symbol: SACOL_RS08060
  • description: conjugal transfer protein
  • length: 351
  • theoretical pI: 9.89778
  • theoretical MW: 41493.5
  • GRAVY: -0.931054

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    NTF2 (CL0051) TpcC; Conjugative transposon protein TcpC (PF12642; HMM-score: 113.2)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.207
    • Ymax_pos: 67
    • Cmax: 0.192
    • Cmax_pos: 67
    • Smax: 0.341
    • Smax_pos: 52
    • Smean: 0.182
    • D: 0.197
  • predicted transmembrane helices (TMHMM): 1

Accession numbers[edit source | edit]

  • GI: 446614656 NCBI
  • RefSeq: WP_000692002 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MKIISKYILTRFSKNGKHFDIPKEQRRVIPKFKNRRKMIVICFYSLLAILLILLLASFIKATRANNDSKEAVNKTNMIQKKYEDNANTVQYSPKLKLYADKFIDTYMNISKDSKELESREKELLKYFPSDYKKPDEKISDTERKLNSKEFYNIKRKDKQTIIQYIVNYDVNITEKKEVKVKKKKKSEKDKDEYETKTEEKQRKVNQNILINIPIKSENNKYVVVEYPYFTPIPDSQLNKAKMVEDNLKDNKREDNPKAKAFIEDFFNKYASSKSDDMAYLMDNPEGLEGTREVSQIREIRLYPKGDDYVAKVEILMKDKDSPLENLEHYTLDITKKDGKYYVKNMTNSIGG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS08060 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]