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04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 02-MAR-2017

Summary[edit source | edit]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS09625
  • pan locus tag?:
  • symbol: SACOL_RS09625
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SACOL_RS09625
  • symbol: SACOL_RS09625
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1927590..1928834
  • length: 1245
  • essential: unknown

Accession numbers[edit source | edit]

  • Location: NC_002951 (1927590..1928834) NCBI
  • MicrobesOnline:

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGATTGATCTGAATCTAATATTGAAGAAGAAGTTTCAAGAGATTTCAGAAGTAGATGAT
    TTCATTTCAAAAGCATCTACTGAAACCGATTATTTTGAACCTTCAACTTTATCACATGGT
    ATACCAGGTATCATTTTGTTTTTAGATGCTTATCAAAAAGTTTTCGATATTAATACTGAG
    CAAATTGTGCATAAGTACATCATGAAATTAGCACCATATTTACAGAGTGGTCAATATAAC
    AATTCTTTGTTTGGTGGACTTTCAGGTATTGCATTTTCAATGGATTTAGCATCGCAAAAT
    GGCAAAAATTATCAAAATATTTTAAATAATATTGATGGTCACATTGTAAATGAAATAGAA
    AATAAATTTGATCAAATATTACAAGAACCATTAAATCCATTAAATTATGATACTGTCAGT
    GGATTAGCTGGGATAGGGAGATATTTGCTAAATAGAGTAGATGAGAATGAATTTAATGTT
    AAAGCATTAAAAAGCATATTAGTATACTTTAAAGATATTCAATATTCTAAAAATAGCTGG
    GTAGTCCCACAAGAAAGTCAATTTTTAGAGTCTGATAAAAATTATTTTACTGAAGGTAAT
    ATCAATCTTGGCCTTGCACATGGAGTGCTAGGACCGATGTCTTTATTTGCATTATGCGTG
    ATTAAAGGAATTACGATTGAAAATCATCAGCACATATTAAAAGACATGTACAAATTTATC
    ATGGACGAAAAATTTTGTAACCACGAAAGATGGTTGCAGCGTTACGATTTAATTTCTGAA
    CGTAATCATTTCAATTTTATTCGGAATGGTTGGTGTTATGGCAATACGGGTGTAATGACG
    ACGTTGTTTTTAATCGGCCAAGCATTACAAGATGATGAAATAATTAAAATGTCTAAAAAA
    GTGATGCTACAAGTAGTAAATGATAAAGATGAAAATTTAATAAGTCCAACTATTTGTCAT
    GGATTGTCATCACAAATATTAATGTTAACAATTATGAATTTGAATTTTGAATTAAATGAA
    GTGTCTGATTATATCACTGTATTAATAAATAAACTGATTTCTCATTATAAGGAAGATTAT
    CTGGTGAATTTTATAGACATTAATGAAAATAAGCAAGATGTATTTAAAAGTAGGAAAGTT
    GGCCTTTTAGAAGGTGAATTAGGGGTCTATCTAACATTGATGACACTGAAAAATACAAAA
    ATTCTCAATGAAAAAAATTGGACCAATGCGTTTTTAATTAGCTGA
    60
    120
    180
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    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1245

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SACOL_RS09625
  • symbol: SACOL_RS09625
  • description: hypothetical protein
  • length: 414
  • theoretical pI: 5.15033
  • theoretical MW: 47627.4
  • GRAVY: -0.14372

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Cellular processesCellular processesToxin production and resistancetype 2 lantibiotic biosynthesis protein LanM (TIGR03897; HMM-score: 60.8)
  • TheSEED:
  • PFAM:
    6_Hairpin (CL0059) LANC_like; Lanthionine synthetase C-like protein (PF05147; HMM-score: 290.1)
    no clan definedYppF; YppF-like protein (PF14178; HMM-score: 14.8)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.11
    • Ymax_pos: 26
    • Cmax: 0.116
    • Cmax_pos: 26
    • Smax: 0.148
    • Smax_pos: 11
    • Smean: 0.108
    • D: 0.109
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

  • GI: 446488462 NCBI
  • RefSeq: WP_000566316 NCBI
  • UniProt:

Protein sequence[edit source | edit]

  • MIDLNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTEQIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIENKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSWVVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFIMDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKKVMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDYLVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

  • SACOL_RS09625 no polycistronic organisation predicted

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]