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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_01568
  • pan locus tag?: SAUPAN001560000
  • symbol: SAOUHSC_01568
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_01568
  • symbol: SAOUHSC_01568
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1501853..1502176
  • length: 324
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    ATGACCTTACAACAAAAAATACTATCACATTTTGCAACATATGACAATTTCAATTCTGAT
    GATGTTGTTGAAACTTTTGGGATATCTAAAACACATGCAAAATCCACACTTTCAAAACTT
    AAGAAAAAAGGAAAGATTGCAATGGAAAGTTGGGGTGTCTGGCGTGTTATTGAATCGCAA
    TTGCATTTAAGTGTAGTCGAACGTAAAAAAGAAATTTTAGAAGAACAATTTGAATTGTTA
    GCAAGATTAAATGAACAAAGTGATGACCCTAGAGAAATAGAAGAACGTATCAAGTTAATG
    ATTCGTCTAGCTAACCAATTTTAA
    60
    120
    180
    240
    300
    324

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_01568
  • symbol: SAOUHSC_01568
  • description: hypothetical protein
  • length: 107
  • theoretical pI: 7.78946
  • theoretical MW: 12562.4
  • GRAVY: -0.514953

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingProtein synthesisRibosomal proteins: synthesis and modificationribosomal small subunit protein bTHX (TIGR04560; HMM-score: 13.6)
    Unknown functionGeneralRrf2 family protein (TIGR00738; HMM-score: 12.6)
  • TheSEED:  
    Phage protein 
  • PFAM:
    HTH (CL0123) AbiEi_4; Transcriptional regulator, AbiEi antitoxin (PF13338; HMM-score: 17.6)
    TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 17.5)
    FaeA; FaeA-like protein (PF04703; HMM-score: 16.5)
    no clan definedDUF4423; Domain of unknown function (DUF4423) (PF14394; HMM-score: 16)
    HTH (CL0123) TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP) (PF07106; HMM-score: 14.9)
    Rrf2; Transcriptional regulator (PF02082; HMM-score: 14.8)
    no clan definedPhage_30_8; Phage GP30.8 protein (PF06019; HMM-score: 13.9)
    HTH (CL0123) PaaX; PaaX-like protein (PF07848; HMM-score: 12.4)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.113
    • Ymax_pos: 50
    • Cmax: 0.114
    • Cmax_pos: 34
    • Smax: 0.168
    • Smax_pos: 45
    • Smean: 0.105
    • D: 0.109
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTLQQKILSHFATYDNFNSDDVVETFGISKTHAKSTLSKLKKKGKIAMESWGVWRVIESQLHLSVVERKKEILEEQFELLARLNEQSDDPREIEERIKLMIRLANQF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]