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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 03-AUG-2016

Summary[edit source | edit]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_02217
  • pan locus tag?: SAUPAN001647000
  • symbol: SAOUHSC_02217
  • pan gene symbol?:
  • synonym:
  • product: phi ETA orf 22-like protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: SAOUHSC_02217
  • symbol: SAOUHSC_02217
  • product: phi ETA orf 22-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2064009..2064779
  • length: 771
  • essential: no DEG

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGGCAACATTTAGAGTTTACAAAGAATCAGGTAACTTTGTCACAGTACACAAAGATTTT
    ATACATGATTCTAATATAAGTTGGAAGGCTAAAGGTATTCTACTTTATTTGTTAAGTCGA
    CCTGATAACTGGCAAATTTACGAAACAGAACTAGAGCAACATTCAACTGATGGACTTAGC
    GGTTTAAAGAGTGGAATCAAGGAACTGGAAGAAATTGGATACATTCAACGTAGTAGAAAA
    CGTGATAAAAGTGGTAGGTTAAATGGTTATGAGTACTTAGTATATGAGCAACCGCACCAC
    ATTCGATTTTCCAACGTTGGAAAAACCGTTAACGGTAAAACCAACAATGGAAAAACCGTT
    AATGGTAAATCGCATACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAAC
    AATACTAATAATGAAGGAAGTATATTGTCGGGCAACCCGACGGTGTCTTCCATTCCCTAT
    AAAGAAATTATCGAATACTTAAATAAAAAAGCAGGAAAGCATTTTAAACATAATACAGCT
    AAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAGGTTGGAGGATTTTAAA
    AAGGTGATTGATATCAAAACAGCTGAATGGTTAAACACGGATAGCGATAAATACCTTAGA
    CCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAATCAAAAAATACAACCAACT
    GGCACGGATCAATTGGAACGCATGAAGTACGACGAAAGTTATTGGGATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    771

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: SAOUHSC_02217
  • symbol: SAOUHSC_02217
  • description: phi ETA orf 22-like protein
  • length: 256
  • theoretical pI: 9.52609
  • theoretical MW: 29687.8
  • GRAVY: -1.00664

Function[edit source | edit]

  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage conserved hypothetical protein, C-terminal domain (TIGR02220; HMM-score: 131.3)
  • TheSEED:  
    Arginine Biosynthesis extended hypothetical protein 
  • PFAM:
    no clan definedPhg_2220_C; Conserved phage C-terminus (Phg_2220_C) (PF09524; HMM-score: 107.4)
    and 1 more
    Telomerase_RBD; Telomerase ribonucleoprotein complex - RNA binding domain (PF12009; HMM-score: 13.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.125
    • Ymax_pos: 47
    • Cmax: 0.15
    • Cmax_pos: 47
    • Smax: 0.182
    • Smax_pos: 1
    • Smean: 0.091
    • D: 0.111
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MATFRVYKESGNFVTVHKDFIHDSNISWKAKGILLYLLSRPDNWQIYETELEQHSTDGLSGLKSGIKELEEIGYIQRSRKRDKSGRLNGYEYLVYEQPHHIRFSNVGKTVNGKTNNGKTVNGKSHTTNNNSTNNDLTNNNNTNNEGSILSGNPTVSSIPYKEIIEYLNKKAGKHFKHNTAKTKDFIKARWNQDFRLEDFKKVIDIKTAEWLNTDSDKYLRPETLFGSKFEGYLNQKIQPTGTDQLERMKYDESYWD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet.: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

Relevant publications[edit source | edit]