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Summary[edit source | edit]

  • pan ID?: SAUPAN000017000
  • symbol?: serS
  • description?: seryl-tRNA synthetase

      descriptions from strain specific annotations:

    • seryl-tRNA synthetase
    • serine--tRNA ligase
  • strand?: +
  • coordinates?: 18640..19926
  • synteny block?: BlockID0000140
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0009 (serS)
    N315:
    SA0009 (serS)
    NCTC8325:
    Newman:
    NWMN_0008 (serS)
    USA300_FPR3757:
    04-02981:
    SA2981_0009 (serS)
    08BA02176:
    C248_0009 (serS)
    11819-97:
    MS7_0009 (serS)
    71193:
    ST398NM01_0009
    ECT-R 2:
    ECTR2_9 (serS)
    ED133:
    SAOV_0009 (serS)
    ED98:
    SAAV_0010 (serS)
    HO 5096 0412:
    SAEMRSA15_00090 (serS)
    JH1:
    SaurJH1_0009
    JH9:
    SaurJH9_0009
    JKD6008:
    SAA6008_00009 (serS)
    JKD6159:
    SAA6159_00009 (serS)
    LGA251:
    SARLGA251_00090 (serS)
    M013:
    M013TW_0010
    MRSA252:
    SAR0009 (serS)
    MSHR1132:
    SAMSHR1132_00090
    MSSA476:
    SAS0009
    Mu3:
    SAHV_0009 (serS)
    Mu50:
    SAV0009 (serS)
    MW2:
    MW0009 (serS)
    RF122:
    SAB0009 (serS)
    ST398:
    SAPIG0009 (serS)
    T0131:
    SAT0131_00010
    TCH60:
    HMPREF0772_10459 (serS)
    TW20:
    SATW20_00090 (serS)
    USA300_TCH1516:
    USA300HOU_0009 (serS)
    VC40:
    SAVC_00045

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIA
    N315            MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIA
    NCTC8325        MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIA
    Newman          MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIA
    USA300_FPR3757  MLDIRLFRNEPDTVKSKIELRGDDPKVVDEILELDEQRRKLISATEEMKARRNKVSEEIA
                    ************************************************************

    COL             LKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDED
    N315            LKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDED
    NCTC8325        LKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDED
    Newman          LKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDED
    USA300_FPR3757  LKKRNKENADDVIAEMRTLGDDIKEKDSQLNEIDNKMTGILCRIPNLISDDVPQGESDED
                    ************************************************************

    COL             NVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNY
    N315            NVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNY
    NCTC8325        NVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNY
    Newman          NVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNY
    USA300_FPR3757  NVEVKKWGTPREFSFEPKAHWDIVEELKMADFDRAAKVSGARFVYLTNEGAQLERALMNY
                    ************************************************************

    COL             MITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY
    N315            MITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY
    NCTC8325        MITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY
    Newman          MITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY
    USA300_FPR3757  MITKHTTQHGYTEMMVPQLVNADTMYGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY
                    ************************************************************

    COL             RNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALE
    N315            RNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALE
    NCTC8325        RNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALE
    Newman          RNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALE
    USA300_FPR3757  RNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEQPEDSWNALE
                    ************************************************************

    COL             EMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ
    N315            EMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEISSCSNCTDFQ
    NCTC8325        EMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ
    Newman          EMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ
    USA300_FPR3757  EMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ
                    ************************************:***********************

    COL             ARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGK
    N315            ARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGK
    NCTC8325        ARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGK
    Newman          ARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGK
    USA300_FPR3757  ARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIPEALVPFMGGK
                    ************************************************************

    COL             TQISKPVK
    N315            TQISKPVK
    NCTC8325        TQISKPVK
    Newman          TQISKPVK
    USA300_FPR3757  TQISKPVK
                    ********