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Summary[edit source | edit]

  • pan ID?: SAUPAN000026000
  • symbol?: dnaC
  • description?: replicative DNA helicase

      descriptions from strain specific annotations:

    • replicative DNA helicase
    • DnaB-like helicase
    • replicative DNA helicase DnaB
  • strand?: +
  • coordinates?: 26731..28131
  • synteny block?: BlockID0000230
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0016 (dnaB)
    N315:
    SA0015 (dnaC)
    NCTC8325:
    Newman:
    NWMN_0015 (dnaB)
    USA300_FPR3757:
    04-02981:
    SA2981_0016 (dnaC)
    08BA02176:
    C248_0016 (dnaC)
    11819-97:
    MS7_0016 (dnaB)
    71193:
    ST398NM01_0016
    ECT-R 2:
    ECTR2_16 (dnaB)
    ED133:
    SAOV_0016 (dnaB)
    ED98:
    SAAV_0018 (dnaB)
    HO 5096 0412:
    SAEMRSA15_00160 (dnaC)
    JH1:
    SaurJH1_0016
    JH9:
    SaurJH9_0016
    JKD6008:
    SAA6008_00016 (dnaC)
    JKD6159:
    SAA6159_00016 (dnaC)
    LGA251:
    SARLGA251_00160 (dnaC)
    M013:
    M013TW_0017
    MRSA252:
    SAR0016 (dnaC)
    MSHR1132:
    SAMSHR1132_00160
    MSSA476:
    SAS0016
    Mu3:
    SAHV_0016 (dnaC)
    Mu50:
    SAV0016 (dnaC)
    MW2:
    MW0016 (dnaC)
    RF122:
    SAB0016 (dnaC)
    ST398:
    SAPIG0016 (dnaB)
    T0131:
    SAT0131_00018 (hepT)
    TCH60:
    HMPREF0772_10452 (dnaB)
    TW20:
    SATW20_00160 (dnaC)
    USA300_TCH1516:
    USA300HOU_0016 (dnaB1)
    VC40:
    SAVC_00080

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE
    N315            MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE
    NCTC8325        MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE
    Newman          MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE
    USA300_FPR3757  MDRMYEQNQMPHNNEAEQSVLGSIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE
                    ************************************************************

    COL             DNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQ
    N315            DNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQ
    NCTC8325        DNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQ
    Newman          DNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQ
    USA300_FPR3757  DNKEIDVVTLMDQLSTEGTLNEAGGPQYLAELSTNVPTTRNVQYYTDIVSKHALKRRLIQ
                    ************************************************************

    COL             TADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNS
    N315            TADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNS
    NCTC8325        TADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNS
    Newman          TADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNS
    USA300_FPR3757  TADSIANDGYNDELELDAILSDAERRILELSSSRESDGFKDIRDVLGQVYETAEELDQNS
                    ************************************************************

    COL             GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS
    N315            GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS
    NCTC8325        GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS
    Newman          GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS
    USA300_FPR3757  GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS
                    ************************************************************

    COL             LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN
    N315            LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN
    NCTC8325        LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN
    Newman          LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN
    USA300_FPR3757  LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN
                    ************************************************************

    COL             DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVI
    N315            DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVI
    NCTC8325        DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELKCPVI
    Newman          DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVI
    USA300_FPR3757  DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRASDNRQQEVSEISRTLKALARELECPVI
                    *******************************************************:****

    COL             ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEP
    N315            ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEP
    NCTC8325        ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEP
    Newman          ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEP
    USA300_FPR3757  ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGGDEDDDDDGGFEP
                    ************************************************************

    COL             QTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM
    N315            QTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM
    NCTC8325        QTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM
    Newman          QTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM
    USA300_FPR3757  QTNDENGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMM
                    **********************************************