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Summary[edit source | edit]

  • pan ID?: SAUPAN000041000
  • symbol?:
  • description?: orf1260
  • strand?: +
  • coordinates?: 41042..55719
  • synteny block?: BlockID0000380
  • occurrence?: in 59% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0025
    08BA02176:
    11819-97:
    MS7_0027
    71193:
    ECT-R 2:
    ECTR2_28
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_00250
    JH1:
    SaurJH1_0025
    JH9:
    SaurJH9_0025
    JKD6008:
    SAA6008_00026
    JKD6159:
    SAA6159_00025
    LGA251:
    M013:
    MRSA252:
    SAR0025
    MSHR1132:
    SAMSHR1132_00260
    MSSA476:
    Mu3:
    SAHV_0025
    Mu50:
    SAV0025
    MW2:
    MW0025
    RF122:
    ST398:
    T0131:
    SAT0131_00028 (ansA)
    TCH60:
    HMPREF0772_10442
    TW20:
    USA300_TCH1516:
    USA300HOU_0025
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRHNIFYNRREFQMIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
    N315            MRHNIFYNRREFQMIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
    USA300_FPR3757  -------------MIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVH
                                 ***********************************************

    COL             IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
    N315            IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
    USA300_FPR3757  IKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWS
                    ************************************************************

    COL             KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
    N315            KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
    USA300_FPR3757  KISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSH
                    ************************************************************

    COL             GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
    N315            GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
    USA300_FPR3757  GSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEE
                    ************************************************************

    COL             IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
    N315            IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
    USA300_FPR3757  IRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFN
                    ************************************************************

    COL             ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
    N315            ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
    USA300_FPR3757  ELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIE
                    ************************************************************

    COL             EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
    N315            EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
    USA300_FPR3757  EPFFMSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNV
                    ************************************************************

    COL             EAIQYKVFGEK
    N315            EAIQYKVFGEK
    USA300_FPR3757  EAIQYKVFGEK
                    ***********