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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN000832000
  • symbol?:
  • description?: orf2

      descriptions from strain specific annotations:

    • orf2
    • pseudogene
  • strand?: +
  • coordinates?: 1068300..1078450
  • synteny block?: BlockID0003990
  • occurrence?: in 44% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0082
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_40
    ED133:
    ED98:
    SAAV_0030
    HO 5096 0412:
    JH1:
    SaurJH1_0071
    JH9:
    SaurJH9_0068
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    SAHV_0081
    Mu50:
    SAV0082
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0087
    VC40:
    SAVC_00125

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
    N315            ----MYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
    NCTC8325        MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
    Newman          MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
    USA300_FPR3757  MKINIYKSIYNFQETNTNFLENLESLNDDNYELLNDKELVSDSNELKLISKVYIRKKDKK
                        :*******************************************************

    COL             LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
    N315            LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
    NCTC8325        LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
    Newman          LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
    USA300_FPR3757  LLDWQLLIKNVYLDTEEDDNLFSESGHHFDAILFLKEDTTLQNNVYIIPFGQAYHDINNL
                    ************************************************************

    COL             IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
    N315            IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
    NCTC8325        IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
    Newman          IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
    USA300_FPR3757  IDYDFGIDFAERAIKNEDIVNKNVNFFQQNRLKEIVNYRRNSVDYVRPSESYISVQGHPQ
                    ************************************************************

    COL             NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
    N315            NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
    NCTC8325        NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
    Newman          NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
    USA300_FPR3757  NPQIFGKTMTCGTSISLRVPNRKQQFIDKISVIIKEINAIINLPQKISEFPRIVTLKDLN
                    ************************************************************

    COL             KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
    N315            KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
    NCTC8325        KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
    Newman          KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVN--IYINSFKNNTLE
    USA300_FPR3757  KIEVLDTLLLKKLSNSSTTENISIDISRFLELSNMILLLDDMLDVNIYIYINSFKNNTLE
                    **********************************************  ************

    COL             TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
    N315            TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
    NCTC8325        TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
    Newman          TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
    USA300_FPR3757  TFDATDPEVDYITEIGDYLLKYDVNSINDVRIEVIDNLGHSNNMLLKTILHAEVEMEDGK
                    ************************************************************

    COL             KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
    N315            KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
    NCTC8325        KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
    Newman          KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
    USA300_FPR3757  KYLLQNGKWGYFNREFFDLLNDHLNEIEIRYNTLTPTGLVFKEGEEGYIKEIVGRLPEEY
                    ************************************************************

    COL             LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
    N315            LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
    NCTC8325        LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
    Newman          LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
    USA300_FPR3757  LMLHKKFIKPINKNFIVKGNGIELADLYNIKNKELFTIKRGINTSLSLYSLEQNIIAINA
                    ************************************************************

    COL             LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
    N315            LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
    NCTC8325        LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
    Newman          LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
    USA300_FPR3757  LKYPESYNFEELIEAIPDNSENIFNDIQRSTNFSIVWILPISSIDNMPIKDMVHTSNVIN
                    ************************************************************

    COL             KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
    N315            KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
    NCTC8325        KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
    Newman          KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
    USA300_FPR3757  KNFQLTNLGSVLLKNKLVEWSLYLKDQRINPIIYMETPTEDRN
                    *******************************************