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Summary[edit source | edit]

  • pan ID?: SAUPAN000948000
  • symbol?: deoD1
  • description?: purine nucleoside phosphorylase

      descriptions from strain specific annotations:

    • purine nucleoside phosphorylase
    • pseudogene
    • putative purine nucleoside phosphorylase
  • strand?: +
  • coordinates?: 1208513..1209305
  • synteny block?: BlockID0004840
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0121 (deoD1)
    N315:
    SA0131 (pnp)
    NCTC8325:
    Newman:
    NWMN_0080 (pnp)
    USA300_FPR3757:
    04-02981:
    SA2981_0137 (pnp)
    08BA02176:
    C248_0125 (deoD1)
    11819-97:
    MS7_0127
    71193:
    ST398NM01_0150
    ECT-R 2:
    ECTR2_92 (deoD)
    ED133:
    SAOV_0083 (deoD1)
    ED98:
    SAAV_0104 (deoD1)
    HO 5096 0412:
    SAEMRSA15_01020 (deoD1)
    JH1:
    SaurJH1_0127
    JH9:
    SaurJH9_0122
    JKD6008:
    SAA6008_00114 (pnp)
    JKD6159:
    SAA6159_00119 (pnp)
    LGA251:
    SARLGA251_01100 (deoD1)
    M013:
    M013TW_0126
    MRSA252:
    SAR0138 (deoD1)
    MSHR1132:
    SAMSHR1132_01120
    MSSA476:
    SAS0110
    Mu3:
    SAHV_0135 (pnp)
    Mu50:
    SAV0136 (pnp)
    MW2:
    MW0110 (pnp)
    RF122:
    SAB0075 (deoD1)
    ST398:
    SAPIG0150 (deoD)
    T0131:
    SAT0131_00124 (efp)
    TCH60:
    HMPREF0772_10362 (deoD)
    TW20:
    SATW20_01470 (deoD1)
    USA300_TCH1516:
    USA300HOU_0148 (deoD1)
    VC40:
    SAVC_00425

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKV
    N315            MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKV
    NCTC8325        MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKV
    Newman          MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKV
    USA300_FPR3757  MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKV
                    ************************************************************

    COL             SVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQ
    N315            SVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQ
    NCTC8325        SVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQ
    Newman          SVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQ
    USA300_FPR3757  SVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQ
                    ************************************************************

    COL             QYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILG
    N315            QYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILG
    NCTC8325        QYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILG
    Newman          QYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILG
    USA300_FPR3757  QYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILG
                    ************************************************************

    COL             VEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
    N315            VEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
    NCTC8325        VEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
    Newman          VEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
    USA300_FPR3757  VEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
                    *******************************************************