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Summary[edit source | edit]

  • pan ID?: SAUPAN000950000
  • symbol?: deoC1
  • description?: deoxyribose-phosphate aldolase

      descriptions from strain specific annotations:

    • deoxyribose-phosphate aldolase
    • deoxyribose-phosphate aldolase 1
  • strand?: +
  • coordinates?: 1210748..1211410
  • synteny block?: BlockID0004860
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0123 (deoC1)
    N315:
    SA0133 (dra)
    NCTC8325:
    Newman:
    NWMN_0082 (dra)
    USA300_FPR3757:
    04-02981:
    SA2981_0139 (dra)
    08BA02176:
    C248_0127 (deoC1)
    11819-97:
    MS7_0129
    71193:
    ST398NM01_0152
    ECT-R 2:
    ECTR2_94 (deoC)
    ED133:
    SAOV_0085
    ED98:
    SAAV_0106 (deoC1)
    HO 5096 0412:
    SAEMRSA15_01040 (deoC1)
    JH1:
    SaurJH1_0129
    JH9:
    SaurJH9_0124
    JKD6008:
    SAA6008_00116 (dra)
    JKD6159:
    SAA6159_00121 (dra)
    LGA251:
    SARLGA251_01120 (deoC1)
    M013:
    M013TW_0128
    MRSA252:
    SAR0140 (deoC1)
    MSHR1132:
    SAMSHR1132_01140
    MSSA476:
    SAS0112
    Mu3:
    SAHV_0137 (dra)
    Mu50:
    SAV0138 (dra)
    MW2:
    MW0112 (dra)
    RF122:
    SAB0077 (deoC1)
    ST398:
    SAPIG0152 (deoC)
    T0131:
    SAT0131_00127
    TCH60:
    HMPREF0772_10360 (deoC)
    TW20:
    SATW20_01490 (deoC1)
    USA300_TCH1516:
    USA300HOU_0150 (deoC1)
    VC40:
    SAVC_00435

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
    N315            MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
    NCTC8325        MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
    Newman          MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
    USA300_FPR3757  MKFEKYIDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADSEVLVCTV
                    ************************************************************

    COL             IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    N315            IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    NCTC8325        IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    Newman          IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
    USA300_FPR3757  IGFPLGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHT
                    ************************************************************

    COL             VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
    N315            VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
    NCTC8325        VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
    Newman          VKVIIETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
    USA300_FPR3757  VKVIIETVLLDHDEIVKASELTKTAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVK
                    ***********************:************************************

    COL             ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    N315            ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    NCTC8325        ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    Newman          ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
    USA300_FPR3757  ASGGVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY
                    ****************************************