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Summary[edit source | edit]

  • pan ID?: SAUPAN000951000
  • symbol?: deoB
  • description?: phosphopentomutase

      descriptions from strain specific annotations:

    • phosphopentomutase
    • putative phosphopentomutase
  • strand?: +
  • coordinates?: 1211423..1212616
  • synteny block?: BlockID0004870
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0124 (deoB)
    N315:
    SA0134 (drm)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0140 (drm)
    08BA02176:
    C248_0128 (deoB)
    11819-97:
    MS7_0130 (deoB)
    71193:
    ST398NM01_0153
    ECT-R 2:
    ECTR2_95 (deoB)
    ED133:
    SAOV_0086 (deoB)
    ED98:
    SAAV_0107 (deoB)
    HO 5096 0412:
    SAEMRSA15_01050 (drm)
    JH1:
    SaurJH1_0130
    JH9:
    SaurJH9_0125
    JKD6008:
    SAA6008_00117 (drm)
    JKD6159:
    SAA6159_00122 (drm)
    LGA251:
    SARLGA251_01130 (drm)
    M013:
    M013TW_0129
    MRSA252:
    SAR0141 (drm)
    MSHR1132:
    SAMSHR1132_01150
    MSSA476:
    SAS0113
    Mu3:
    SAHV_0138 (drm)
    Mu50:
    SAV0139 (drm)
    MW2:
    MW0113 (drm)
    RF122:
    SAB0078 (drm)
    ST398:
    SAPIG0153 (deoB)
    T0131:
    SAT0131_00128
    TCH60:
    HMPREF0772_10359 (deoB)
    TW20:
    SATW20_01500 (drm)
    USA300_TCH1516:
    USA300HOU_0151 (deoB1)
    VC40:
    SAVC_00440 (drm)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQTLPNLEKLGLGNIDKL
    N315            MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQTLPNLEKLGLGNIDKL
    NCTC8325        MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQTLPNLEKLGLGNIDKL
    Newman          MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQTLPNLEKLGLGNIDKL
    USA300_FPR3757  MTRPFNRVHLIVMDSVGIGEAPDAADFKDEGSHTLRHTLEGFDQTLPNLEKLGLGNIDKL
                    ************************************************************

    COL             PVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPEELIQQIEEMT
    N315            PVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPEELIQQIEEMT
    NCTC8325        PVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPEELIQQIEEMT
    Newman          PVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPEELIQQIEEMT
    USA300_FPR3757  PVVNAVEQPEAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPEELIQQIEEMT
                    ************************************************************

    COL             GRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV
    N315            GRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV
    NCTC8325        GRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV
    Newman          GRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV
    USA300_FPR3757  GRKVVANKPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV
                    ************************************************************

    COL             RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGKTVLDHLKDGGYDVIAIGK
    N315            RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGKTVLDHLKDGGYDVIAIGK
    NCTC8325        RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGKTVLDHLKDGGYDVIAIGK
    Newman          RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGKTVLDHLKDGGYDVIAIGK
    USA300_FPR3757  RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGKTVLDHLKDGGYDVIAIGK
                    ************************************************************

    COL             INDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTGISFLNLVDFDALYGHRRDKPGYAQ
    N315            INDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTGISFLNLVDFDALYGHRRDKPGYAQ
    NCTC8325        INDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTGISFLNLVDFDALYGHRRDKPGYAQ
    Newman          INDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTGISFLNLVDFDALYGHRRDKPGYAQ
    USA300_FPR3757  INDIYDGEGVTEAVRTKSNMDGMDQLMKIVKKDFTGISFLNLVDFDALYGHRRDKPGYAQ
                    ************************************************************

    COL             AIKDFDDRLPELFSNLKEDDLVIITADHGNDPTAPGTDHTREYIPVIMYSPKFKGGHALE
    N315            AIKDFDDRLPELFSNLKEDDLVIITADHGNDPTAPGTDHTREYIPVIMYSPKFKGGHALE
    NCTC8325        AIKDFDDRLPELFSNLKEDDLVIITADHGNDPTAPGTDHTREYIPVIMYSPKFKGGHALE
    Newman          AIKDFDDRLPELFSNLKEDDLVIITADHGNDPTAPGTDHTREYIPVIMYSPKFKGGHALE
    USA300_FPR3757  AIKDFDDRLPELFSNLKEDDLVIITADHGNDPTAPGTDHTREYIPVIMYSPKFKGGHALE
                    ************************************************************

    COL             SDTTFSSIGATIADNFNVTLPEFGKSYLKELK
    N315            SDTTFSSIGATIADNFNVTLPEFGKSYLKELK
    NCTC8325        SDTTFSSIGATIADNFNVTLPEFGKSYLKELK
    Newman          SDTTFSSIGATIADNFNVTLPEFGKSYLKELK
    USA300_FPR3757  SDTTFSSIGATIADNFNVTLPEFGKSYLKELK
                    ********************************