PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN000994000
• symbol^?: capP
• synonym:
• description^?: UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)

  descriptions from strain specific annotations:

  • UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
  • capsular polysaccharide biosynthesis protein Cap5P
  • capsular polysaccharide biosynthesis protein CapP
  • capsular polysaccharide synthesis protein Cap5P
  • capsular polysaccharide synthesis UDP-N-acetylglucosamine 2-epimerase CapP, putative
  • UDP-N-acetylglucosamine 2-epimerase
  • UDP-N-acetylglucosamine 2-epimerase Cap5P
  • Capsular polysaccharide synthesis enzyme Cap8P
  • capsular polysaccharide synthesis enzyme Cap5P
  • capsular polysaccharide synthesis enzyme CapP
  • UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc-2-epimerase). domain protein
  • UDP-N-acetylglucosamine 2-epimerase CapP
• strand^?: +
• coordinates^?: 1263219..1270246
• synteny block^?: BlockID0005270
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0151 (cap5P)
N315:
SA0159 (capP)
NCTC8325:
SAOUHSC_00129
Newman:
NWMN_0110 (capP)
USA300_FPR3757:
SAUSA300_0167 (cap5P)
04-02981:
SA2981_0165
08BA02176:
C248_0153 (capP)
11819-97:
MS7_0158
6850:
RSAU_000118 (capP)
71193:
ST398NM01_0178
ECT-R 2:
ECTR2_128
ED133:
SAOV_0111
ED98:
SAAV_0132 (cap5P)
HO 5096 0412:
SAEMRSA15_01300 (capP)
JH1:
SaurJH1_0155
JH9:
SaurJH9_0150
JKD6008:
SAA6008_00142 (cap5P)
JKD6159:
SAA6159_00148 (cap5P)
LGA251:
SARLGA251_01380 (capP)
M013:
M013TW_0154
MRSA252:
SAR0166 (capP)
MSHR1132:
SAMSHR1132_01380
MSSA476:
SAS0139
Mu3:
SAHV_0163 (capP)
Mu50:
SAV0164 (capP)
MW2:
MW0139 (cap8P)
RF122:
SAB0105 (capP)
ST398:
SAPIG0178
T0131:
SAT0131_00155 (mreB)
TCH60:
HMPREF0772_10334 (capP)
TW20:
SATW20_01750 (capP)
USA300_TCH1516:
USA300HOU_0178 (cap5P)
VC40:
SAVC_00590

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSI
  N315            MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSI
  NCTC8325        ----------MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSI
  Newman          MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSI
  USA300_FPR3757  MCLNFREDNVMKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSI
                            **************************************************
  
  COL             FDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYH
  N315            FDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYH
  NCTC8325        FDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYH
  Newman          FDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYH
  USA300_FPR3757  FDIQADHDLNIMQDQQTLAGLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYH
                  *******************.****************************************
  
  COL             QIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFIT
  N315            QIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFIT
  NCTC8325        QIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFIT
  Newman          QIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFIT
  USA300_FPR3757  QIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFIT
                  ************************************************************
  
  COL             GNTVIDALSTTVQNDFVSTIINKHKGKKVVLLTAHRRENIGEPMHQIFKAVRDLADEYKD
  N315            GNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKD
  NCTC8325        GNTVIDALSTTVQNDFVSTIINKHKGKKVVLLTAHRRENIGEPMHQIFKAVRDLADEYKD
  Newman          GNTVIDALSTTVQNDFVSTIINKHKGKKVVLLTAHRRENIGEPMHQIFKAVRDLADEYKD
  USA300_FPR3757  GNTVIDALSTTVQNDFVSTIINKHKGKKVVLLTAHRRENIGEPMHQIFKAVRDLADEYKD
                  *****************************:******************************
  
  COL             VVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAP
  N315            VVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAP
  NCTC8325        VVFIYPMHRNLKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAP
  Newman          VVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAP
  USA300_FPR3757  VVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAP
                  ********** *************************************************
  
  COL             TFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGD
  N315            TFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGD
  NCTC8325        TFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGD
  Newman          TFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGD
  USA300_FPR3757  TFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGD
                  ************************************************************
  
  COL             GQASRRICEAIEYYFGLRTDKPDEFVPLRHK
  N315            GQASRRICEAIEYYFGLRSDKPDEFVPLRHK
  NCTC8325        GQASRRICEAIEYYFGLRTDKPDEFVPLRHK
  Newman          GQASRRICEAIEYYFGLRTDKPDEFVPLRHK
  USA300_FPR3757  GQASRRICEAIEYYFGLRTDKPDEFVPLRHK
                  ******************:************