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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001016000
- symbol?: fdh
- synonym:
- description?: formate dehydrogenase
- formate dehydrogenase
- putative D-isomer specific 2-hydroxyaciddehydrogenase
- D-isomer specific 2-hydroxyacid dehydrogenase
- formate dehydrogenase (NAD-dependent formatedehydrogenase) (FDH)
- formate dehydrogenase, (NAD-dependent formate dehydrogenase) (FDH)
- NAD-dependent formate dehydrogenase
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1280415..1281590
- synteny block?: BlockID0005440
- occurrence?: in 85% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0178 (fdh)
08BA02176:
C248_0166
11819-97:
MS7_0170 (fdh1)
6850:
—
71193:
ST398NM01_0191
ECT-R 2:
ECTR2_140
ED133:
—
ED98:
SAAV_0145
HO 5096 0412:
SAEMRSA15_01420
JH1:
SaurJH1_0167
JH9:
SaurJH9_0162
JKD6008:
SAA6008_00154
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR0178
MSHR1132:
SAMSHR1132_01500
MSSA476:
SAS0152
Mu3:
SAHV_0176 (fdh)
Mu50:
SAV0177 (fdh)
MW2:
MW0151 (fdh)
RF122:
SAB0117
ST398:
SAPIG0191
T0131:
SAT0131_00168
TCH60:
HMPREF0772_10322 (fdh)
TW20:
SATW20_01870
USA300_TCH1516:
USA300HOU_0190 (fdh)
VC40:
SAVC_00650
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
N315 MSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKAIGL
NCTC8325 ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
Newman ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
USA300_FPR3757 ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
************************:**
COL KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
N315 KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
NCTC8325 KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
Newman KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
USA300_FPR3757 KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
************************************************************
COL GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
N315 GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
NCTC8325 GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
Newman GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
USA300_FPR3757 GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
************************************************************
COL GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
N315 GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSS
NCTC8325 GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
Newman GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
USA300_FPR3757 GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
***********************************************************:
COL SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
N315 SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
NCTC8325 SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
Newman SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
USA300_FPR3757 SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
************************************************************
COL DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
N315 DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
NCTC8325 DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
Newman DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
USA300_FPR3757 DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
************************************************************
COL VASGRIASKSYTAK
N315 VASGRIASKSYTAK
NCTC8325 VASGRIASKSYTAK
Newman VASGRIASKSYTAK
USA300_FPR3757 VASGRIASKSYTAK
**************