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Summary[edit source | edit]

  • pan ID?: SAUPAN001016000
  • symbol?: fdh
  • description?: formate dehydrogenase

      descriptions from strain specific annotations:

    • formate dehydrogenase
    • putative D-isomer specific 2-hydroxyaciddehydrogenase
    • D-isomer specific 2-hydroxyacid dehydrogenase
    • formate dehydrogenase (NAD-dependent formatedehydrogenase) (FDH)
    • formate dehydrogenase, (NAD-dependent formate dehydrogenase) (FDH)
    • NAD-dependent formate dehydrogenase
    • pseudogene
  • strand?: +
  • coordinates?: 1280415..1281590
  • synteny block?: BlockID0005440
  • occurrence?: in 88% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    SA0171 (fdh)
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0178 (fdh)
    08BA02176:
    C248_0166
    11819-97:
    MS7_0170 (fdh1)
    71193:
    ST398NM01_0191
    ECT-R 2:
    ECTR2_140
    ED133:
    ED98:
    SAAV_0145
    HO 5096 0412:
    SAEMRSA15_01420
    JH1:
    SaurJH1_0167
    JH9:
    SaurJH9_0162
    JKD6008:
    SAA6008_00154
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR0178
    MSHR1132:
    SAMSHR1132_01500
    MSSA476:
    SAS0152
    Mu3:
    SAHV_0176 (fdh)
    Mu50:
    SAV0177 (fdh)
    MW2:
    MW0151 (fdh)
    RF122:
    SAB0117
    ST398:
    SAPIG0191
    T0131:
    SAT0131_00168
    TCH60:
    HMPREF0772_10322 (fdh)
    TW20:
    SATW20_01870
    USA300_TCH1516:
    USA300HOU_0190 (fdh)
    VC40:
    SAVC_00650

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
    N315            MSNGAVFFVIFLKQATCNTYFKEVKIYHLGEMDMKIVALFPEAVEGQENQLLNTKKAIGL
    NCTC8325        ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
    Newman          ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
    USA300_FPR3757  ---------------------------------MKIVALFPEAVEGQENQLLNTKKALGL
                                                     ************************:**

    COL             KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
    N315            KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
    NCTC8325        KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
    Newman          KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
    USA300_FPR3757  KTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGV
                    ************************************************************

    COL             GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
    N315            GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
    NCTC8325        GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
    Newman          GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
    USA300_FPR3757  GSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQV
                    ************************************************************

    COL             GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
    N315            GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSS
    NCTC8325        GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
    Newman          GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
    USA300_FPR3757  GNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVST
                    ***********************************************************:

    COL             SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
    N315            SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
    NCTC8325        SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
    Newman          SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
    USA300_FPR3757  SDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAG
                    ************************************************************

    COL             DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
    N315            DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
    NCTC8325        DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
    Newman          DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
    USA300_FPR3757  DVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDII
                    ************************************************************

    COL             VASGRIASKSYTAK
    N315            VASGRIASKSYTAK
    NCTC8325        VASGRIASKSYTAK
    Newman          VASGRIASKSYTAK
    USA300_FPR3757  VASGRIASKSYTAK
                    **************