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Summary[edit source | edit]

  • pan ID?: SAUPAN001025000
  • symbol?: argD
  • description?: ornithine aminotransferase

      descriptions from strain specific annotations:

    • ornithine aminotransferase
    • ornithine aminotransferase 1
    • ornithine--oxo-acid transaminase
    • Acetylornithine aminotransferase 1
    • putative ornithine aminotransferase precursor
  • strand?: -
  • coordinates?: 1296540..1297724
  • synteny block?: BlockID0005530
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0170 (rocD1)
    N315:
    NCTC8325:
    Newman:
    NWMN_0129 (argD)
    USA300_FPR3757:
    04-02981:
    SA2981_0186
    08BA02176:
    C248_0174
    11819-97:
    MS7_0178
    71193:
    ST398NM01_0200
    ECT-R 2:
    ECTR2_148 (rocD)
    ED133:
    SAOV_0129 (rocD1)
    ED98:
    SAAV_0153 (rocD1)
    HO 5096 0412:
    SAEMRSA15_01500
    JH1:
    SaurJH1_0175
    JH9:
    SaurJH9_0170
    JKD6008:
    SAA6008_00163 (rocD1)
    JKD6159:
    SAA6159_00166 (rocD1)
    LGA251:
    SARLGA251_01560
    M013:
    M013TW_0172
    MRSA252:
    SAR0186
    MSHR1132:
    SAMSHR1132_01580
    MSSA476:
    SAS0160
    Mu3:
    SAHV_0184
    Mu50:
    SAV0185
    MW2:
    MW0159
    RF122:
    SAB0125c
    ST398:
    SAPIG0200 (rocD)
    T0131:
    SAT0131_00177
    TCH60:
    HMPREF0772_10314 (rocD)
    TW20:
    SATW20_01950
    USA300_TCH1516:
    USA300HOU_0198 (argD)
    VC40:
    SAVC_00690

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVK
    N315            MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVK
    NCTC8325        MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVK
    Newman          MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVK
    USA300_FPR3757  MNSIIELTDYYSSNNYAPLKLVISKGKGVKVWDTDGKQYIDCISGFSVANQGHCHPTIVK
                    ************************************************************

    COL             AMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLPLNSGTEAVEAAIKIARKWGSE
    N315            AMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLSLNSGTEAVEAAIKIARKWGSE
    NCTC8325        AMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLPLNSGTEAVEAAIKIARKWGSE
    Newman          AMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLPLNSGTEAVEAAIKIARKWGSE
    USA300_FPR3757  AMTEQASKLSIISRVLYSDNLGKWEEKICHLAKKDKVLPLNSGTEAVEAAIKIARKWGSE
                    **************************************.*********************

    COL             VKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAI
    N315            VKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAI
    NCTC8325        VKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAI
    Newman          VKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAI
    USA300_FPR3757  VKGITDGQVEIIAMNNNFHGRTLGSLSLSNHDAYKAGFHPLLQGTTTVDFGDIEQLTQAI
                    ************************************************************

    COL             SPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILLIADEIQVGLGRTGKWFAMEW
    N315            SPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILMIADEIQVGLGRTGKWFAMEW
    NCTC8325        SPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILLIADEIQVGLGRTGKWFAMEW
    Newman          SPNTAAIIWEPIQGEGGVNIPPKGYIQAVRQLCDKHQILLIADEIQVGLGRTGKWFAMEW
    USA300_FPR3757  SPNTAAIILEPIQGEGGVNIPPKGYIQAVRQLCDKHQILLIADEIQVGLGRTGKWFAMEW
                    ******** ******************************:********************

    COL             EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGTHGSTFGGNPLAIAISTAALDVL
    N315            EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGTHGSTFGGNPLAIAISTAALDVL
    NCTC8325        EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGTHGSTFGGNPLAIAISTAALDVL
    Newman          EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGTHGSTFGGNPLAIAISTAALDVL
    USA300_FPR3757  EQVVPDIYILGKALGGGLYPVSAVLANNDVMRVLTPGTHGSTFGGNPLAIAISTAALDVL
                    ************************************************************

    COL             KDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTDAAPFVDQLIQRGILC
    N315            KDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTDAAPFVDQLIQRGILC
    NCTC8325        KDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTDAAPFVDQLIQRGILC
    Newman          KDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTDAAPFVDQLIQRGILC
    USA300_FPR3757  KDEQLVERSERLGSFLLKALLQLKHPSIKEIRGRGLFIGIELNTDAAPFVDQLIQRGILC
                    ************************************************************

    COL             KDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN
    N315            KDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN
    NCTC8325        KDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN
    Newman          KDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN
    USA300_FPR3757  KDTHRTIIRLSPPLVIDKEEIHQIVAAFQDVFKN
                    **********************************