PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001043000
• symbol^?: —
• synonym:
• description^?: sepS16B protein
• strand^?: +
• coordinates^?: 1318783..1320786
• synteny block^?: BlockID0005700
• occurrence^?: in 33% of 33 strains

⊟Orthologs

COL:
SACOL0182
N315:
—
NCTC8325:
SAOUHSC_00164
Newman:
NWMN_0141
USA300_FPR3757:
SAUSA300_0198
04-02981:
—
08BA02176:
—
11819-97:
MS7_0189 (sepS16B)
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_0142
ED98:
—
HO 5096 0412:
SAEMRSA15_01620
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
SAA6159_00178
LGA251:
SARLGA251_01680
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0210
VC40:
SAVC_00755

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MYYPYLRGKQNELFAIRELLEKGLIGDCIQPIIEPIKYTTTFKNTLQYCGEKAFSINLVV
  NCTC8325        MYYPYLRGKQNELFAIRELLEKGLIGDCIQPIIEPIKYTTTFKNTLQYCGEKAFSINLVV
  Newman          MYYPYLRGKQNELFAIRELLEKGLIGDCIQPIIEPIKYTTTFKNTLQYCGEKAFSINLVV
  USA300_FPR3757  MYYPYLRGKQNELFAIRELLEKGLIGDCIQPIIEPIKYTTTFKNTLQYCGEKAFSINLVV
                  ************************************************************
  
  COL             NSKLTEEEISNETVAHLTEIITKNKSVIQKAYLGPSDEGNDRLKQQFSSNSLAILTSVDD
  NCTC8325        NSKLTEEEISNETVAHLTEIITKNKSVIQKAYLGPSDEGNDRLKQQFSSNSLAILTSVDD
  Newman          NSKLTEEEISNETVAHLTEIITKNKSVIQKAYLGPSDEGNDRLKQQFSSNSLAILTSVDD
  USA300_FPR3757  NSKLTEEEISNETVAHLTEIITKNKSVIQKAYLGPSDEGNDRLKQQFSSNSLAILTSVDD
                  ************************************************************
  
  COL             WEMFGDKNKLEMVFVPDDRHIKRKLRNIPNKGIIMDPFNKLSRNVDYLDNDDEFYSDDHL
  NCTC8325        WEMFGDKNKLEMVFVPDDRHIKRKLRNIPNKGIIMDPFNKLSRNVDYLDNDDEFYSDDHL
  Newman          WEMFGDKNKLEMVFVPDDRHIKRKLRNIPNKGIIMDPFNKLSRNVDYLDNDDEFYSDDHL
  USA300_FPR3757  WEMFGDKNKLEMVFVPDDRHIKRKLRNIPNKGIIMDPFNKLSRNVDYLDNDDEFYSDDHL
                  ************************************************************
  
  COL             YYKEDGYVAFSDYSVIGGEYVDGGFSPLAIAIHIVYFDEANELRVKHFVSDSNNDRSNPG
  NCTC8325        YYKEDGYVAFSDYSVIGGEYVDGGFSPLAIAIHIVYFDEANELRVKHFVSDSNNDRSNPG
  Newman          YYKEDGYVAFSDYSVIGGEYVDGGFSPLAIAIHIVYFDEANELRVKHFVSDSNNDRSNPG
  USA300_FPR3757  YYKEDGYVAFSDYSVIGGEYVDGGFSPLAIAIHIVYFDEANELRVKHFVSDSNNDRSNPG
                  ************************************************************
  
  COL             KKFFEAVDKLVTWSKNLDIKNRSYALGQFEELNENNKYPGLGLIKRLSIMHHLEIMNRYL
  NCTC8325        KKFFEAVDKLVTWSKNLDIKNRSYALGQFEELNENNKYPGLGLIKRLSIMHHLEIMNRYL
  Newman          KKFFEAVDKLVTWSKNLDIKNRSYALGQFEELNENNKYPGLGLIKRLSIMHHLEIMNRYL
  USA300_FPR3757  KKFFEAVDKLVTWSKNLDIKNRSYALGQFEELNENNKYPGLGLIKRLSIMHHLEIMNRYL
                  ************************************************************
  
  COL             ESQNENM
  NCTC8325        ESQNENM
  Newman          ESQNENM
  USA300_FPR3757  ESQNENM
                  *******