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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001046000
  • symbol?:
  • description?: RES domain-containing protein
  • strand?: +
  • coordinates?: 1320773..1329717
  • synteny block?: BlockID0005720
  • occurrence?: in 31% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_0190
    71193:
    ECT-R 2:
    ED133:
    SAOV_0143
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    SAA6159_00179
    LGA251:
    SARLGA251_01690
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0211
    VC40:
    SAVC_00760

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKICEKCFNNTEIVEIIANDNSKFDNCDIDNNHLGVKIFDTTKDIDKLELIRDYLRPALE
    NCTC8325        MKICEKCFNNTEIVEIIANDNSKFDNCDIDNNHLGVKIFDTTKDIDKLELIRDYLRPALE
    Newman          MKICEKCFNNTEIVEIIANDNSKFDNCDIDNNHLGVKIFDTTKDIDKLELIRDYLRPALE
    USA300_FPR3757  MKICEKCFNNTEIVEIIANDNSKFDNCDIDNNHLGVKIFDTTKDIDKLELIRDYLRPALE
                    ************************************************************

    COL             LYDISINLPDTFSPKEGKKIEIALKDDWSIFNVEEAQISCILNELFKDDENLDRRVLEDL
    NCTC8325        LYDISINLPDTFSPKEGKKIEIALKDDWSIFNVEEAQISCILNELFKDDENLDRRVLEDL
    Newman          LYDISINLPDTFSPKEGKKIEIALKDDWSIFNVEEAQISCILNELFKDDENLDRRVLEDL
    USA300_FPR3757  LYDISINLPDTFSPKEGKKIEIALKDDWSIFNVEEAQISCILNELFKDDENLDRRVLEDL
                    ************************************************************

    COL             VGAKIINDKKYTNKNLIVANNDWDGFCESLKYKNRFHNNMINLENLAFFLDITTNYYSIE
    NCTC8325        VGAKIINDKKYTNKNLIVANNDWDGFCESLKYKNRFHKNMINLENLAFFLDITTNYYSIE
    Newman          VGAKIINDKKYTNKNLIVANNDWDGFCESLKYKNRFHNNMINLENLAFFLDITTNYYSIE
    USA300_FPR3757  VGAKIINDKKYTNKNLIVANNDWDGFCESLKYKNRFHNNMINLENLAFFLDITTNYYSIE
                    *************************************:**********************

    COL             EFRERFEPLYRSRIVKFITEKSELMSPPKGFATAGRLNSKWISVLYLSTKEQVSIEEVKP
    NCTC8325        EFRERFEPLYRSRIVKFITEKSELMSPPKGFATAGRLNSKWISVLYLSTKEQVSIEEVKP
    Newman          EFRERFEPLYRSRIVKFITEKSELMSPPKGFATAGRLNSKWISVLYLSTKEQVSIEEVKP
    USA300_FPR3757  EFRERFEPLYRSRIVKFITEKSELMSPPKGFATAGRLNSKWISVLYLSTKEQVSIEEVKP
                    ************************************************************

    COL             KHNDIIYIGKVKLQKNVTKEKLKIANLTNLTSNAIKAGDDGFRKYFVNYQTLKKIHKGIT
    NCTC8325        KHNDIIYIGKVKLQKNVTKEKLKIANLTNLTSNAIKAGDDGFRKYFVNYQTLKKIHKGIT
    Newman          KHNDIIYIGKVKLQKNVTKEKLKIANLTNLTSNAIKAGDDGFRKYFVNYQTLKKIHKGIT
    USA300_FPR3757  KHNDIIYIGKVKLQKNVTKEKLKIANLTNLTSNAIKAGDDGFRKYFVNYQTLKKIHKGIT
                    ************************************************************

    COL             NPSDEQGIDYLPFQYLADYIRSLKYDGIMYESILQDGTFNFVFFDQSLFECVNYERKRVS
    NCTC8325        NPSDEQGIDYLPFQYLADYIRSLKYDGIMYESILQDGTFNFVFFDQSLFECVNYERKRVS
    Newman          NPSDEQGIDYLPFQYLADYIRSLKYDGIMYESILQDGTFNFVFFDQSLFECVNYERKRVS
    USA300_FPR3757  NPSDEQGIDYLPFQYLADYIRSLKYDGIMYESILQDGTFNFVFFDQSLFECVNYERKRVS
                    ************************************************************

    COL             DVKYTLTKLS
    NCTC8325        DVKYTLTKLS
    Newman          DVKYTLTKLS
    USA300_FPR3757  DVKYTLTKLS
                    **********