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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001377000
  • symbol?:
  • description?: phage protein
  • strand?: -
  • coordinates?: 1672734..1673078
  • synteny block?: BlockID0008560
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ST398NM01_2931
    ECT-R 2:
    ED133:
    SAOV_1100
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_02023
    JKD6159:
    LGA251:
    M013:
    M013TW_1459
    MRSA252:
    MSHR1132:
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02102
    TCH60:
    TW20:
    SATW20_19600
    USA300_TCH1516:
    USA300HOU_1972
    VC40:

Genome Viewer[edit source | edit]

Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    Newman          ------------------------------MEIIVDENLVLKEKERLQVLYKDIPSNKLK
    USA300_FPR3757  MGNGEGLDFAIILKIHVYPPSYNHFKAGDEMEIIVDENLVLKEKERLQVLYKDIPSNKLK
                                                  ******************************

    Newman          VVDGLIIQAARLRVMLDYMWEDIKEKGDYDLFTQSEKAPPYERERPVAKLFNARDAAYQK
    USA300_FPR3757  VVDGLIIQAARLRVMLDYMWEDIKEKGDYDLFTQSEKAPPYERERPVAKLFNARDAAYQK
                    ************************************************************

    Newman          IIKQLSDLLPEEKEDTETPSDDYL
    USA300_FPR3757  IIKQLSDLLPEEKEDTETPSDDYL
                    ************************