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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001416000
  • symbol?: dut
  • description?: deoxyuridine 5'-triphosphate nucleotidohydrolase

      descriptions from strain specific annotations:

    • deoxyuridine 5'-triphosphate nucleotidohydrolase
    • putative dUTP pyrophosphatase
    • dUTP diphosphatase
    • prophage L54a, deoxyuridine 5'-triphosphate nucleotidohydrolase
    • bacteriophage L54a, deoxyuridine 5-triphosphate nucleotidohydrolase
  • strand?: -
  • coordinates?: 1692283..1692795
  • synteny block?: BlockID0008950
  • occurrence?: in 28% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0357 (dut)
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    MS7_1480 (dut)
    71193:
    ST398NM01_2935
    ECT-R 2:
    ED133:
    SAOV_1092
    ED98:
    SAAV_0845
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    SAMSHR1132_18150
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_1980 (dut)
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGL
    NCTC8325        MTNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGL
    USA300_FPR3757  MTNILQVKLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGL
                    *** *******:************************************************

    COL             LTSRSGVSSKTYLVIETGKIDAGYHGNLGINIKND------EERDGIPFLYDDIDAELED
    NCTC8325        LTSRSGVSSKTYLVIETGKIDAGYHGNLGINIKND------EERDGIPFLYDDIDAELED
    USA300_FPR3757  LTSRSGVSSKTHLVIETGKIDAGYHGNLGINIKNDNETLESEDMSNFGRSPAGIDGKYAR
                    ***********:***********************      *: ..:     .**.:   

    COL             GLIS--ILDIKGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGA
    NCTC8325        GLIS--ILDIKGNYVQDGRGIRRVYQINKGDKLAQLVIVPIWTPELKQVEEFESVSERGA
    USA300_FPR3757  LPVTDKILCMNGSYV-----------INKGDKLAQLVIVPIWTPELKQVEEFESVSERGA
                      ::  ** ::*.**           **********************************

    COL             KGFGSSGV
    NCTC8325        KGFGSSGV
    USA300_FPR3757  KGFGSSGV
                    ********