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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001768000
  • symbol?:
  • description?: SNF2 family protein

      descriptions from strain specific annotations:

    • SNF2 family protein
    • SNF2 family N-domain protein
    • type III restriction enzyme, res subunit
    • phage protein
    • phage helicase
    • SNF2-related protein
    • SNF2 domain protein
  • strand?: -
  • coordinates?: 2192971..2194957
  • synteny block?: BlockID0011670
  • occurrence?: in 41% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0345
    11819-97:
    MS7_1472
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_13780
    JH1:
    SaurJH1_1075
    JH9:
    SaurJH9_1055
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1523
    MSHR1132:
    MSSA476:
    SAS0928
    Mu3:
    Mu50:
    MW2:
    MW1405
    RF122:
    ST398:
    SAPIG0369
    T0131:
    TCH60:
    HMPREF0772_11686
    TW20:
    USA300_TCH1516:
    USA300HOU_1456
    VC40:

Genome Viewer[edit source | edit]

NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    NCTC8325        MEHLAIDFKPHSYQKYAIDKVIDNEKYGLFLDMGLGKTVSTLTAFSELQLLDTKKMLVIA
    USA300_FPR3757  --------------------------------MGLGKTVSTLTAFSELQLLDTKKMLVIA
                                                    ****************************

    NCTC8325        PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
    USA300_FPR3757  PKQVAKDTWVDEVDKWNHLNHLKVSLVLGTPKERNDALNTEADIYVTNKENTKWLCDQYK
                    ************************************************************

    NCTC8325        KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
    USA300_FPR3757  KEWPFDMVVIDELSTFKSPKSQRFKSIKKKLPLINRFIGLTGTPSPNSLQDLWAQVYLID
                    ************************************************************

    NCTC8325        RGERLESSFSRYRERYFKPTHQVSEHVFNWELRDGSEEKIYERIEDICLSMKAKDYLDMP
    USA300_FPR3757  RGERLESSFSRYRERYFKPTHQVSEHIFKWELRDGSEEKIYKQIEDICLSMKAKDYLDMP
                    **************************:*:************::*****************

    NCTC8325        DRVDTKQTVVLSEKERKVYAELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDD
    USA300_FPR3757  DRVDTKQTVVLSEKERKVYEELEKNYILESEEEGTVVAQNGASLSQKLLQLSNGAVYTDE
                    ******************* ***************************************:

    NCTC8325        EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLEDSNYKERWNS
    USA300_FPR3757  EDVRLIHDKKLDKLEEIIEESQGQPILLFYNFKHDKERILQRFKEATTLDDSNYKERWNS
                    *************************************************:**********

    NCTC8325        GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
    USA300_FPR3757  GDIKLLIAHPASAGHGLNLQQGGHIIVWFGLTWSLELYQQANARLYRQGQNHTTIIHHIM
                    ************************************************************

    NCTC8325        TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
    USA300_FPR3757  TDNTIDQRVYKALQNKELTQEELMKAIKARIAKHK
                    ***********************************