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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001815000
  • symbol?:
  • description?: SLT orf 488-like protein

      descriptions from strain specific annotations:

    • SLT orf 488-like protein
    • phage protein
    • phiSLT ORF488-like protein
    • phi SLT phage protein
    • phage-like protein
  • strand?: -
  • coordinates?: 2249574..2251050
  • synteny block?: BlockID0011910
  • occurrence?: in 53% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0366
    11819-97:
    MS7_1451
    71193:
    ECT-R 2:
    ED133:
    SAOV_0336
    ED98:
    SAAV_2015
    HO 5096 0412:
    SAEMRSA15_13570
    JH1:
    SaurJH1_1096
    JH9:
    SaurJH9_1075
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1502
    MSHR1132:
    MSSA476:
    SAS0949
    Mu3:
    Mu50:
    MW2:
    MW1385
    RF122:
    SAB0261
    ST398:
    SAPIG0391
    T0131:
    TCH60:
    HMPREF0772_11707
    TW20:
    USA300_TCH1516:
    USA300HOU_1436
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLFLSEENIKARI
    NCTC8325        MSNLEKSVAINLENTAHYGNISNLDITFRTGESDSSVLLFNITKNNQPLLLSEENIKARI
    USA300_FPR3757  MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLLLSEENIKARI
                    ****************** *********************** ******:**********

    COL             AIRGKGVMVVAPLEILDPFKGVLKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
    NCTC8325        AIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
    USA300_FPR3757  AIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTIT
                    *********************:**************************************

    COL             FNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
    NCTC8325        FNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
    USA300_FPR3757  FNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLS
                    ********* **************************************************

    COL             DIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
    NCTC8325        DIQIAKSSSIDELKQLANSHISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
    USA300_FPR3757  DIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVT
                    *******************:****************************************

    COL             SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVE
    NCTC8325        SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRGVSTNGTVE
    USA300_FPR3757  SGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRDVSTNGTVE
                    ***************************************************.********

    COL             YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
    NCTC8325        YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
    USA300_FPR3757  YLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSEWSELAINDYNTPFETVQSAQSKANMAE
                    ************************************************************

    COL             SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
    NCTC8325        SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
    USA300_FPR3757  SNAKLYADDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGSPF
                    ************************************************************

    COL             GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
    NCTC8325        GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
    USA300_FPR3757  GGGKISLNPSNLPDGDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTI
                    ************************************************************

    COL             NKIIGVRK
    NCTC8325        NKIIGVRK
    USA300_FPR3757  NKIIGVRK
                    ********