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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001817000
  • symbol?:
  • description?: phage protein

      descriptions from strain specific annotations:

    • phage protein
    • phiSLT ORF96-like protein
  • strand?: -
  • coordinates?: 2253317..2253607
  • synteny block?: BlockID0011930
  • occurrence?: in 53% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0364
    11819-97:
    MS7_1453
    71193:
    ECT-R 2:
    ED133:
    SAOV_0334
    ED98:
    SAAV_2017
    HO 5096 0412:
    SAEMRSA15_13590
    JH1:
    SaurJH1_1094
    JH9:
    SaurJH9_1073
    JKD6008:
    JKD6159:
    SAA6159_01362
    LGA251:
    M013:
    MRSA252:
    SAR1504
    MSHR1132:
    MSSA476:
    SAS0947
    Mu3:
    Mu50:
    MW2:
    MW1387
    RF122:
    ST398:
    SAPIG0389
    T0131:
    TCH60:
    HMPREF0772_11705
    TW20:
    USA300_TCH1516:
    USA300HOU_1438
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MATEEVKIKALLENDKQYFPATHWKAINGIPYAGSSDIDGLPQDGIISVDDKNKLDKLKI
    NCTC8325        MATEEVKIKALLENDKQYFPATHWKAINGIPYAGSSDIDGLPQDGIISVNDKNKLDNLKI
    USA300_FPR3757  MATEEVKIKALLENDKQYFPATHWKAINGIPYAGSSDIDGLPQDGIISVDDKNKLDKLKI
                    *************************************************:******:***

    COL             GEAGIIQNSIVQKSPNGKLWKITVDDSGKLGTVLFY
    NCTC8325        GEAGIIQNSIVQKSPNGKLWKITVDDSGKLGTVLFY
    USA300_FPR3757  GEAGIIQNSIVQKSPNGKLWKITVDDSGKLGTVLFY
                    ************************************