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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001825000
  • symbol?:
  • description?: tail protein

      descriptions from strain specific annotations:

    • tail protein
    • prophage L54a, major tail protein
    • bacteriophage L54aIg-like domain-containing protein
    • phiSLT ORF151-like protein, major tail protein
    • bacterial Ig-like domain family protein
    • Ig domain-containing protein
    • major tail protein
    • phage major tail protein
  • strand?: -
  • coordinates?: 2271752..2272207
  • synteny block?: BlockID0012010
  • occurrence?: in 47% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0358
    11819-97:
    MS7_1459
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2023
    HO 5096 0412:
    SAEMRSA15_13650
    JH1:
    SaurJH1_1088
    JH9:
    SaurJH9_1068
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1510
    MSHR1132:
    MSSA476:
    SAS0941
    Mu3:
    Mu50:
    MW2:
    MW1392
    RF122:
    ST398:
    SAPIG0382
    T0131:
    TCH60:
    HMPREF0772_11699
    TW20:
    USA300_TCH1516:
    USA300HOU_1444
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTKTLKVYKGDDVVASEQGEGKVSVTLSNLEADTTYPKGTYQVAWEENGKESSKVDVPQF
    NCTC8325        MTKTLKVYKGDDVVASEQGEGKVSVTLSNLEADTTYPKGTYQVAWEENGKESSKVDVPQF
    USA300_FPR3757  MTKTLKVYKGDDVVASEQGEGKVSVTLSNLEADTTYPKGTYQVAWEENGKESSKVDVPQF
                    ************************************************************

    COL             KTNPILVSGVSFTPETKSIMVNTDDNVEPNIAPSTATNKILKYTSEHPEFVTVDENTGAI
    NCTC8325        KTNPILVSGVSFTPETKSIMVNTDDNVEPNIAPSTATNKILKYTSEHPEFVTVDENTGAI
    USA300_FPR3757  KTNPILVSGVSFTPETKSIMVNTDDNVEPNIAPSTATNKILKYTSEHPEFVTVDENTGAI
                    ************************************************************

    COL             HGVAEGTSVITAMSTDGSDKSGQISVTVTNG
    NCTC8325        HGVAEGTSVITATSTDGSDKSGQISVTVTNG
    USA300_FPR3757  HGVAEGTSVITAMSTDGSDKSGQISVTVTNG
                    ************ ******************