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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN001832000
  • symbol?:
  • description?: ATP-dependent Clp protease ClpP

      descriptions from strain specific annotations:

    • ATP-dependent Clp protease ClpP
    • prophage L54a, Clp protease
    • scaffolding protease
    • phiSLT ORF257-like protein prophage protease
    • bacteriophage protease
    • clp protease family protein
    • peptidase S14, ClpP
    • peptidase S14 ClpP
    • phage Clp protease
    • phage protease
  • strand?: -
  • coordinates?: 2277313..2278086
  • synteny block?: BlockID0012080
  • occurrence?: in 47% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0351
    11819-97:
    MS7_1466
    71193:
    ECT-R 2:
    ED133:
    ED98:
    SAAV_2030
    HO 5096 0412:
    SAEMRSA15_13720
    JH1:
    SaurJH1_1081
    JH9:
    SaurJH9_1061
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SAR1517
    MSHR1132:
    MSSA476:
    SAS0934
    Mu3:
    Mu50:
    MW2:
    MW1399
    RF122:
    ST398:
    SAPIG0375
    T0131:
    TCH60:
    HMPREF0772_11692
    TW20:
    USA300_TCH1516:
    USA300HOU_1451
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
    NCTC8325        MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
    USA300_FPR3757  MSMKAKYFQMKRKSKSKGEIFIYGDIVSDKWFESDVTATDFKNKLDELGDISEIDVHINS
                    ************************************************************

    COL             SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
    NCTC8325        SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
    USA300_FPR3757  SGGSVFEGHAIYNMLKMHPAKINIYVDALAASIASVIAMSGDTIFMHKNSFLMIHNSWVM
                    ************************************************************

    COL             TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
    NCTC8325        TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
    USA300_FPR3757  TVGNAEELRKTADLLEKTDAVSNSAYLDKAKDLDQEHLKQMLDAETWLTAEEALSFGLID
                    ************************************************************

    COL             EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
    NCTC8325        EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
    USA300_FPR3757  EILGANEIAASISKEQYKRFENVPEDLKKDVDKITKIDDVDTSELVETPKESMSLEEKEK
                    ************************************************************

    COL             REKIKRECEILKMTMNY
    NCTC8325        REKIKRECEILKMTMNY
    USA300_FPR3757  REKIKRECEILKMTMNY
                    *****************