PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001960000
• symbol^?: —
• synonym:
• description^?: integrase

  descriptions from strain specific annotations:

  • integrase
  • integrase-like protein
  • pseudogene
• strand^?: -
• coordinates^?: 2437716..2438036
• synteny block^?: BlockID0013130
• occurrence^?: in 21% of 33 strains

⊟Orthologs

COL:
SACOL0441
N315:
—
NCTC8325:
SAOUHSC_00352
Newman:
NWMN_0361
USA300_FPR3757:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
RSAU_000314
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_04370
USA300_TCH1516:
USA300HOU_0391
VC40:
SAVC_01595

⊟Genome Viewer

COL
NCTC8325
Newman

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MLGMISLLIESTYSQIRLVALSTRTKLATLLKGGADISSIKKPITTHTLHHSHISTLAQL
  Newman          MLGMISLLIESTYSQIRLVALSTRTKLATLLKGGADISSIKKPITTHTLHHSHISTLAQL
                  ************************************************************
  
  NCTC8325        GINLKAMQEHVGHSDYKKNLEIYTHVTNQMAKDMMNKFERLGS
  Newman          GINLKAMQEHVGHSDYKKNLEIYTHVTNQMAKDMMNKFERLGS
                  *******************************************