PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002140000
• symbol^?: lpl6
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • lipoprotein, putative
  • staphyloccoccus tandem lipoprotein
  • pseudogene
  • putative lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: +
• coordinates^?: 2642891..2643652
• synteny block^?: BlockID0014460
• occurrence^?: in 48% of 33 strains

⊟Orthologs

COL:
SACOL0483
N315:
SA0399
NCTC8325:
—
Newman:
NWMN_0409 (lpl6nm)
USA300_FPR3757:
SAUSA300_0416
04-02981:
SA2981_0415
08BA02176:
—
11819-97:
—
6850:
RSAU_000370
71193:
—
ECT-R 2:
ECTR2_374
ED133:
—
ED98:
SAAV_0382
HO 5096 0412:
SAEMRSA15_03690
JH1:
SaurJH1_0474
JH9:
SaurJH9_0462
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0402
Mu3:
SAHV_0437
Mu50:
SAV0439
MW2:
MW0400 (lpl13)
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0444
VC40:
—

⊟Genome Viewer

COL
N315
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKCFQKLYIFILILIVLMAGCESNKITGDSKETQIKKSFAKTLDVYPTKNLEDFYDKEGY
  N315            ------------------------------------------------------------
  Newman          MKCFQKLYIFILILIVLMAGCESNKITGDSKETQIKKSFAKTLDVYPTKNLEDFYDKEGY
  USA300_FPR3757  MKCFQKLYIFILILIVLMAGCESNKITGDSKETQIKKSFAKTLDVYPTKNLEDFYDKEGY
                                                                              
  
  COL             RDGEFKKGDKGKWVIRSEMTTELKNENMVSKGMVIRLNRNSRTCTGEYFVRIVKEDSEGK
  N315            ------------------------------------MNRNTRTTTGYFSIEEIDSRKSLD
  Newman          RDGEFKKGDKGKWVIRSEMTTELKNENMVSKGMVIRLNRNSRTCTGEYFVRIVKEDSEGK
  USA300_FPR3757  RDGEFKKGDKGKWVIRSEMTTELKNENMVSKGMVIRLNRNSRTCTGEYFVRIVKEDSEGK
                                                      :***:** ** : :. :.. .. .
  
  COL             VYSDERKYPVKMENNKIITLKPIDDEKVKKEIEEFKFFVQYGNFKELENYKDGEVTYNPE
  N315            ERETEKKYPVKMINNKIIPTEEIKDEKLKKEIENFKFFVQYGSFKGIENYENGDISYNSE
  Newman          VYSDERKYPVKMENNKIITLKPIDDEKVKKEIEEFKFFVQYGNFKELENYKDGEVTYNPE
  USA300_FPR3757  VYSDERKYPVKMENNKIITLKPIDDEKVKKEIEEFKFFVQYGNFKELENYKDGEVTYNPE
                    . *:****** *****. : *.***:*****:********.** :***::*:::**.*
  
  COL             APIYSAQYQLKNSDYNVEQLRKRYNITTKKAPKLLLKGSGNLKGSSVGYKNIEFTFVENK
  N315            APIYSAKYKLKNDDYNVKELRKRYNIPTEKAPKLLLKGSGDLKGSSVGYKEIEFIFIENK
  Newman          APIYSAQYQLKNSDYNVEQLRKRYNITTKKAPKLLLKGSGNLKGSSVGYKNIEFTFVENK
  USA300_FPR3757  APIYSAQYQLKNSDYNVEQLRKRYNITTKKAPKLLLKGSGNLKGSSVGYKNIEFTFVENK
                  ******:*:***.****::*******.*:***********:*********:*** *:***
  
  COL             EENIYFTDSINFNPSEDK
  N315            KENIYFSDGLNLIPSD--
  Newman          EENIYFTDSINFNPSEDK
  USA300_FPR3757  EENIYFTDSINFNPSEDK
                  :*****:*.:*: **: