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Summary[edit source | edit]

  • pan ID?: SAUPAN002150000
  • symbol?:
  • description?: pseudogene
  • strand?: +
  • coordinates?: 2662394..2662727
  • synteny block?: BlockID0014550
  • occurrence?: in 94% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0424
    08BA02176:
    C248_0499
    11819-97:
    MS7_0422
    71193:
    ST398NM01_0515
    ECT-R 2:
    ECTR2_383
    ED133:
    SAOV_0462
    ED98:
    SAAV_0392
    HO 5096 0412:
    SAEMRSA15_03730
    JH1:
    SaurJH1_0483
    JH9:
    SaurJH9_0471
    JKD6008:
    SAA6008_00451
    JKD6159:
    SAA6159_00400
    LGA251:
    SARLGA251_03830
    M013:
    MRSA252:
    SAR0448
    MSHR1132:
    MSSA476:
    SAS0406
    Mu3:
    SAHV_0446
    Mu50:
    SAV0448
    MW2:
    MW0404
    RF122:
    SAB0399
    ST398:
    SAPIG0515
    T0131:
    SAT0131_00486
    TCH60:
    HMPREF0772_10074
    TW20:
    SATW20_05170
    USA300_TCH1516:
    USA300HOU_0450
    VC40:
    SAVC_01835

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MTLIEPDMTLRMPDISTTVETLNLISKMEAQKENIRTVIAPEHKHKYKDIENGLKGEEKV
    N315            MTLIEPDMNLRMPDISTTVETLNLISKMEAQKENIRSVIAPEHKHKYKDIENGLKGEEKV
    NCTC8325        MTLIEPDMTLRMPDISTTVETLNLISKMEAQKENIRTVIAPEHKHKYKDIENGLKGEEKV
    Newman          MTLIEPDMTLRMPDISTTVETLNLISKMEAQKENIRTVIAPEHKHKYKDIENGLKGEEKV
    USA300_FPR3757  MTLIEPDMTLRMPDISTTVETLNLISKMEAQKENIRTVIAPEHKHKYKDIENGLKGEEKV
                    ********.***************************:***********************

    COL             LIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKINS
    N315            LIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKINS
    NCTC8325        LIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKINS
    Newman          LIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKINS
    USA300_FPR3757  LIEQMAQHCEAFKANFKGAAQGDWVKSAMSEIDSIKDDLKKINS
                    ********************************************