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Summary[edit source | edit]

  • pan ID?: SAUPAN002183000
  • symbol?:
  • description?: conserved multitransmembrane protein

      descriptions from strain specific annotations:

    • conserved multitransmembrane protein
    • membrane spanning protein
    • multitransmembrane protein
    • yibE/F-like family protein
  • strand?: -
  • coordinates?: 2686244..2687026
  • synteny block?: BlockID0014840
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0444
    08BA02176:
    C248_0518
    11819-97:
    MS7_0442
    71193:
    ST398NM01_0534
    ECT-R 2:
    ECTR2_402
    ED133:
    SAOV_0486c
    ED98:
    SAAV_0411
    HO 5096 0412:
    SAEMRSA15_03940
    JH1:
    SaurJH1_0503
    JH9:
    SaurJH9_0490
    JKD6008:
    SAA6008_00472
    JKD6159:
    SAA6159_00418
    LGA251:
    SARLGA251_04020
    M013:
    M013TW_0433
    MRSA252:
    SAR0468
    MSHR1132:
    SAMSHR1132_04130
    MSSA476:
    SAS0426
    Mu3:
    SAHV_0466
    Mu50:
    SAV0469
    MW2:
    MW0423
    RF122:
    SAB0418c
    ST398:
    SAPIG0534
    T0131:
    SAT0131_00509
    TCH60:
    HMPREF0772_10054
    TW20:
    SATW20_05370
    USA300_TCH1516:
    USA300HOU_0469
    VC40:
    SAVC_01930

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCII
    N315            MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCII
    NCTC8325        MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCII
    Newman          MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCII
    USA300_FPR3757  MNAVFILALLLLFLMIIFGGKKGFISYLTLFLNFAILIISIVLIIFGVPIYVVTFFFCII
                    ************************************************************

    COL             IGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMN
    N315            IGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMN
    NCTC8325        IGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMN
    Newman          IGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMN
    USA300_FPR3757  IGACNLFVLNSYNVKTQAAFISTIVTTILLITLIYLSVYFGHLQGFSTEQQDETYVYSMN
                    ************************************************************

    COL             IGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILA
    N315            IGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILA
    NCTC8325        IGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILA
    Newman          IGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILA
    USA300_FPR3757  IGIDMVQFMVFTIILAVIAAVIDLTITISSPIYELHQVNPTLTQYELFQSGMRVGREILA
                    ************************************************************

    COL             TSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAW
    N315            TSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAW
    NCTC8325        TSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAW
    Newman          TSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAW
    USA300_FPR3757  TSANTIYLAFFGGQLALFIWFFKLKYSFGHIINSKIFAQEFISIILGGIAVAISIPITAW
                    ************************************************************

    COL             ITAFLIKRPSRQRKNDESIN
    N315            ITAFLIKRPSRQRKNDESIN
    NCTC8325        ITAFLIKRPSRQRKNDESIN
    Newman          ITAFLIKRPSRQRKNDESIN
    USA300_FPR3757  ITAFLIKRPSRQRKNDESIN
                    ********************