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Summary[edit source | edit]

  • pan ID?: SAUPAN002192000
  • symbol?: treR
  • description?: trehalose operon transcription repressor treR

      descriptions from strain specific annotations:

    • trehalose operon transcription repressor treR
    • GntR family transcriptional regulator
    • trehalose operon repressor
    • Trehalose operon transcriptional repressor
  • strand?: +
  • coordinates?: 2699450..2700196
  • synteny block?: BlockID0014930
  • occurrence?: in 97% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    NWMN_0440 (treR)
    USA300_FPR3757:
    04-02981:
    SA2981_0451
    08BA02176:
    C248_0526
    11819-97:
    MS7_0450 (treR)
    71193:
    ST398NM01_0542
    ECT-R 2:
    ECTR2_410 (treR)
    ED133:
    SAOV_0494
    ED98:
    SAAV_0419
    HO 5096 0412:
    SAEMRSA15_04010
    JH1:
    SaurJH1_0510
    JH9:
    SaurJH9_0497
    JKD6008:
    SAA6008_00480 (treR)
    JKD6159:
    SAA6159_00425 (treR)
    LGA251:
    SARLGA251_04090
    M013:
    M013TW_0441
    MRSA252:
    SAR0475
    MSHR1132:
    SAMSHR1132_04200
    MSSA476:
    SAS0433
    Mu3:
    SAHV_0473
    Mu50:
    SAV0476
    MW2:
    MW0430
    RF122:
    SAB0425
    ST398:
    SAPIG0542 (treR)
    T0131:
    SAT0131_00517
    TCH60:
    HMPREF0772_10046 (treR)
    TW20:
    SATW20_05440
    USA300_TCH1516:
    VC40:
    SAVC_01965

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
    N315            MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
    NCTC8325        MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
    Newman          MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
    USA300_FPR3757  MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
                    ************************************************************

    COL             KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
    N315            KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
    NCTC8325        KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
    Newman          KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
    USA300_FPR3757  KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
                    ************************************************************

    COL             NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
    N315            NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
    NCTC8325        NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
    Newman          NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
    USA300_FPR3757  NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
                    ************************************************************

    COL             KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
    N315            KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
    NCTC8325        KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
    Newman          KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
    USA300_FPR3757  KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
                    ************************************************************

    COL             IK
    N315            IK
    NCTC8325        IK
    Newman          IK
    USA300_FPR3757  IK
                    **