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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002192000
- symbol?: treR
- synonym:
- description?: trehalose operon repressor
- trehalose operon repressor
- GntR family regulatory protein similar to trehalose operon transcription repressor treR
- GntR family transcriptional regulator
- Trehalose operon transcriptional repressor
- trehalose operon transcription repressor treR
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 2699450..2700196
- synteny block?: BlockID0014930
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0451
08BA02176:
C248_0526
11819-97:
MS7_0450 (treR)
6850:
RSAU_000410
71193:
ST398NM01_0542
ECT-R 2:
ECTR2_410 (treR)
ED133:
SAOV_0494
ED98:
SAAV_0419
HO 5096 0412:
SAEMRSA15_04010
JH1:
SaurJH1_0510
JH9:
SaurJH9_0497
JKD6008:
SAA6008_00480 (treR)
JKD6159:
SAA6159_00425 (treR)
LGA251:
SARLGA251_04090
M013:
M013TW_0441
MRSA252:
SAR0475
MSHR1132:
SAMSHR1132_04200
MSSA476:
SAS0433
Mu3:
SAHV_0473
Mu50:
SAV0476
MW2:
MW0430
RF122:
SAB0425
ST398:
SAPIG0542 (treR)
T0131:
SAT0131_00517
TCH60:
HMPREF0772_10046 (treR)
TW20:
SATW20_05440
USA300_TCH1516:
—
VC40:
SAVC_01965
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
N315 MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
NCTC8325 MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
Newman MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
USA300_FPR3757 MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQ
************************************************************
COL KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
N315 KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
NCTC8325 KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
Newman KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
USA300_FPR3757 KIHGKGSLVIYQEVTEFPFSELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNI
************************************************************
COL NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
N315 NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
NCTC8325 NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
Newman NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
USA300_FPR3757 NSSESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVASDSIYDYLEKVLNLNISYSS
************************************************************
COL KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
N315 KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
NCTC8325 KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
Newman KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
USA300_FPR3757 KSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
************************************************************
COL IK
N315 IK
NCTC8325 IK
Newman IK
USA300_FPR3757 IK
**