PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002317000
• symbol^?: rpsL
• synonym:
• description^?: 30S ribosomal protein S12

  descriptions from strain specific annotations:

  • 30S ribosomal protein S12
  • 30S ribosomalprotein S12p (S23e)
• strand^?: +
• coordinates^?: 2835469..2835918
• synteny block^?: BlockID0016160
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0591 (rpsL)
N315:
SA0503 (rpsL)
NCTC8325:
SAOUHSC_00527 (rpsL)
Newman:
NWMN_0507 (rpsL)
USA300_FPR3757:
SAUSA300_0530 (rpsL)
04-02981:
SA2981_0522 (rpsL)
08BA02176:
C248_0620 (rpsL)
11819-97:
MS7_0535 (rpsL)
6850:
RSAU_000497 (rpsL)
71193:
ST398NM01_0620
ECT-R 2:
ECTR2_499 (rpsL)
ED133:
SAOV_0580
ED98:
SAAV_0508 (rpsL)
HO 5096 0412:
SAEMRSA15_04720 (rpsL)
JH1:
SaurJH1_0582 (rpsL)
JH9:
SaurJH9_0568 (rpsL)
JKD6008:
SAA6008_00551 (rpsL)
JKD6159:
SAA6159_00499 (rpsL)
LGA251:
SARLGA251_04810 (rpsL)
M013:
M013TW_0532
MRSA252:
SAR0550 (rpsL)
MSHR1132:
SAMSHR1132_04890
MSSA476:
SAS0503 (rpsL)
Mu3:
SAHV_0543 (rpsL)
Mu50:
SAV0545 (rpsL)
MW2:
MW0500 (rpsL)
RF122:
SAB0496 (rpsL)
ST398:
SAPIG0620 (rpsL)
T0131:
SAT0131_00598
TCH60:
HMPREF0772_12644 (rpsL)
TW20:
SATW20_06150 (rpsL)
USA300_TCH1516:
USA300HOU_0539 (rpsL)
VC40:
SAVC_02315 (rpsL)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPRKPNS
  N315            MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNS
  NCTC8325        MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNS
  Newman          MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNS
  USA300_FPR3757  MPTINQLVRKPRQSKIKKSDSPALNKGFNSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNS
                  *******************************************************:****
  
  COL             ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVRDLPGVRYHIVRGALDTSGV
  N315            ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGV
  NCTC8325        ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGV
  Newman          ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGV
  USA300_FPR3757  ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGV
                  ****************************************:*******************
  
  COL             DGRRQGRSLYGTKKPKN
  N315            DGRRQGRSLYGTKKPKN
  NCTC8325        DGRRQGRSLYGTKKPKN
  Newman          DGRRQGRSLYGTKKPKN
  USA300_FPR3757  DGRRQGRSLYGTKKPKN
                  *****************