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Summary[edit source | edit]

  • pan ID?: SAUPAN002449000
  • symbol?:
  • description?: staphylococcus aureus paralogous family
  • strand?: +
  • coordinates?: 2961040..2964604
  • synteny block?: BlockID0016870
  • occurrence?: in 63% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0574
    08BA02176:
    C248_0677
    11819-97:
    71193:
    ECT-R 2:
    ECTR2_550
    ED133:
    ED98:
    SAAV_0561
    HO 5096 0412:
    JH1:
    SaurJH1_0635
    JH9:
    SaurJH9_0620
    JKD6008:
    SAA6008_00610
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0562
    Mu3:
    SAHV_0595
    Mu50:
    SAV0597
    MW2:
    MW0557
    RF122:
    ST398:
    SAPIG0674
    T0131:
    TCH60:
    TW20:
    SATW20_06710
    USA300_TCH1516:
    USA300HOU_0598
    VC40:
    SAVC_02595

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
    N315            ---MLCESKVINKNPKYRIIKYESEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
    NCTC8325        METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
    Newman          METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
    USA300_FPR3757  METLLCESKVINKNPKYRIIKYDSEYLMIDLASNWIVFFFPFINWLIPKTYVKITKNDYE
                       :******************:*************************************

    COL             KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
    N315            KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEKLIVWSSCFIGFLGVIFFYC
    NCTC8325        KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
    Newman          KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
    USA300_FPR3757  KLNIVKPVKNKSIGWTIFAGIVLLGGTVRRNTYLFDFQLEELIVWSSCFIGFLEIIFFYC
                    ****************************************:************ :*****

    COL             YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
    N315            YLNKKLTLNVYKENKNNELKLRLLPSFKNMCFTIFYYLFTGFMSYGAFYLLVFENVQNLI
    NCTC8325        YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
    Newman          YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
    USA300_FPR3757  YLNKKLTLNIYNESKNNELKLRLLPSFKNICFTIFYYLFTGFMSYGAFYLLVFENVQNLI
                    *********:*:*.***************:******************************

    COL             LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
    N315            LYISWLFMTMLFMLMNMHSIIDKKVHIFLKSNK
    NCTC8325        LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
    Newman          LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
    USA300_FPR3757  LYVSWLFMTMLFMFMNMHSIIDKKVHIFLKSNK
                    **:**********:*******************