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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN002450000
  • symbol?:
  • description?: staphylococcus aureus paralogous family
  • strand?: +
  • coordinates?: 2961040..2964620
  • synteny block?: BlockID0016880
  • occurrence?: in 44% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    C248_0680
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    JH1:
    JH9:
    JKD6008:
    SAA6008_00614
    JKD6159:
    LGA251:
    M013:
    M013TW_0584
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0565
    Mu3:
    Mu50:
    MW2:
    MW0560
    RF122:
    SAB0549
    ST398:
    SAPIG0677
    T0131:
    TCH60:
    TW20:
    SATW20_06740
    USA300_TCH1516:
    USA300HOU_0602
    VC40:
    SAVC_02620

Genome Viewer[edit source | edit]

COL chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             METLLCETENINKNPKYRIIKYKDEYLMIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
    NCTC8325        ---------------------------MIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
    Newman          ------------------------------------------------------------
    USA300_FPR3757  ---------------------------MIDLVSTWLALFFPMINWLIPKKYVKISEKDFE
                                                                                

    COL             TLNIVKTAKINSFWPVAGSTVLFGVMLR---RYSHLFIVKYEYSIVILICCIIILGIFLF
    NCTC8325        TLNIVKTAKINSFWPVAGSTVLFGVMLR---RYSHLFIVKYEYSIVILICCIIILGIFLF
    Newman          -------------------------MLHHNTRY------------------------FSV
    USA300_FPR3757  TLNIVKTAKINSFWPVAGSTVLFGVMLR---RYSHLFIVKYEYSIVILICCIIILGIFLF
                                             **:   **                        * .

    COL             FLYLNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQN
    NCTC8325        FLYLNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQN
    Newman          FLYLNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQN
    USA300_FPR3757  FLYLNQKLKLQIYNENKNKSNKIIIFPTLKSLCLSIVLYIYLGGGSFFTIYMLLTIEVQN
                    ************************************************************

    COL             IILFITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
    NCTC8325        IILFITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
    Newman          IILFITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
    USA300_FPR3757  IILFITLFVIFLFFLFLNMCSLYDNKVHVLFKSNGIEKF
                    ***************************************