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⊟Summary[edit | edit source]
- pan ID?: SAUPAN002520000
- symbol?: abcA
- synonym:
- description?: ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein
- ABC transporter ATP-binding protein/permease
- ATP-binding cassette transporter A
- multidrug ABC transporter ATP-binding protein, putative
- ABC superfamily ATP binding cassette transporter, ABC protein
- ABC transporter
- ABC transporter-like protein
- Lipid A export ATP-binding/permease MsbA
- Lipid A export ATP-binding/permease protein MsbA
- multidrug resistance ABC transporter ATP-binding/permease protein BmrA
- multidrug resistance ABC transporter ATP-binding and permease
- multidrug resistance ABC transporter ATP-binding and permease protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3032911..3034638
- synteny block?: BlockID0017560
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0619 (msbA)
08BA02176:
C248_0725
11819-97:
MS7_0694 (bmrA)
6850:
RSAU_000599
71193:
ST398NM01_0722
ECT-R 2:
ECTR2_595
ED133:
SAOV_0678 (abcA)
ED98:
SAAV_0606 (abcA)
HO 5096 0412:
SAEMRSA15_05690
JH1:
SaurJH1_0681
JH9:
SaurJH9_0666
JKD6008:
SAA6008_00660 (abcA)
JKD6159:
SAA6159_00598 (abcA)
LGA251:
SARLGA251_05770 (abcA)
M013:
M013TW_0631
MRSA252:
SAR0653
MSHR1132:
SAMSHR1132_05890
MSSA476:
SAS0609
Mu3:
SAHV_0640
Mu50:
SAV0643
MW2:
MW0605
RF122:
SAB0593
ST398:
SAPIG0722
T0131:
SAT0131_00713 (pcrB)
TCH60:
HMPREF0772_12544 (lmrA)
TW20:
SATW20_07180 (abcA)
USA300_TCH1516:
USA300HOU_0663
VC40:
SAVC_02850
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIA
N315 MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIA
NCTC8325 MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIA
Newman MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIA
USA300_FPR3757 MKRENPLFFLFKKLSWPVGLIVAAITISSLGSLSGLLVPLFTGRIVDKFSVSHINWNLIA
************************************************************
COL LFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLT
N315 LFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLT
NCTC8325 LFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLT
Newman LFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLT
USA300_FPR3757 LFGGIFVINALLSGLGLYLLSKIGEKIIYAIRSVLWEHIIQLKMPFFDKNESGQLMSRLT
************************************************************
COL DDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRIM
N315 DDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRIM
NCTC8325 DDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRIM
Newman DDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRIM
USA300_FPR3757 DDTKVINEFISQKLPNLLPSIVTLVGSLIMLFILDWKMTLLTFITIPIFVLIMIPLGRIM
************************************************************
COL QKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAA
N315 QKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAA
NCTC8325 QKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAA
Newman QKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAA
USA300_FPR3757 QKISTSTQSEIANFSGLLGRVLTEMRLVKISNTERLELDNAHKNLNEIYKLGLKQAKIAA
************************************************************
COL VVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYK
N315 VVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYK
NCTC8325 VVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYK
Newman VVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYK
USA300_FPR3757 VVQPISGIVMLLTIAIILGFGALEIATGAITAGTLIAMIFYVIQLSMPLINLSTLVTDYK
************************************************************
COL KAVGASSRIYEIMQEPIEPTEALEDSENVLIDDGVLSFEHVDFKYDVKKILDDVSFQIPQ
N315 KAVGASSRIYEIMQEPIEPTEALEDSENVLIDDGVLSFEHVDFKYDVKKILDDVSFQIPQ
NCTC8325 KAVGASSRIYEIMQEPIEPTEALEDSENVLIDDGVLSFEHVDFKYDVKKILDDVSFQIPQ
Newman KAVGASSRIYEIMQEPIEPTEALEDSENVLIDDGVLSFEHVDFKYDVKKILDDVSFQIPQ
USA300_FPR3757 KAVGASSRIYEIMQEPIEPTEALEDSENVLIDDGVLSFEHVDFKYDVKKILDDVSFQIPQ
************************************************************
COL GQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSM
N315 GQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSM
NCTC8325 GQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSM
Newman GQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSM
USA300_FPR3757 GQVSAFVGPSGSGKSTIFNLIERMYEIESGDIKYGLESVYDIPLSKWRRKIGYVMQSNSM
************************************************************
COL MSGTIRDNILYGINRHVSDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR
N315 MSGTIRDNILYGINRHVSDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR
NCTC8325 MSGTIRDNILYGINRHVSDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR
Newman MSGTIRDNILYGINRHVSDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR
USA300_FPR3757 MSGTIRDNILYGINRHVSDEELINYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR
************************************************************
COL IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQI
N315 IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQI
NCTC8325 IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQI
Newman IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQI
USA300_FPR3757 IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTIVIAHRLSTIKKAGQI
************************************************************
COL IFLDKGQVTGKGTHSELMASHAKYKNFVVSQKLTD
N315 IFLDKGQVTGKGTHSELMASHAKYKNFVVSQKLTD
NCTC8325 IFLDKGQVTGKGTHSELMASHAKYKNFVVSQKLTD
Newman IFLDKGQVTGKGTHSELMASHAKYKNFVVSQKLTD
USA300_FPR3757 IFLDKGQVTGKGTHSELMASHAKYKNFVVSQKLTD
***********************************