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Summary[edit source | edit]

  • pan ID?: SAUPAN002559000
  • symbol?:
  • description?: membrane spanning protein
  • strand?: -
  • coordinates?: 3072726..3073415
  • synteny block?: BlockID0017950
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0652
    08BA02176:
    C248_0760
    11819-97:
    MS7_0727
    71193:
    ST398NM01_0753
    ECT-R 2:
    ECTR2_627
    ED133:
    SAOV_0710c
    ED98:
    SAAV_0638
    HO 5096 0412:
    SAEMRSA15_06010
    JH1:
    SaurJH1_0715
    JH9:
    SaurJH9_0699
    JKD6008:
    SAA6008_00692
    JKD6159:
    SAA6159_00630
    LGA251:
    SARLGA251_06080
    M013:
    M013TW_0662
    MRSA252:
    SAR0728
    MSHR1132:
    SAMSHR1132_06210
    MSSA476:
    SAS0640
    Mu3:
    SAHV_0672
    Mu50:
    SAV0675
    MW2:
    MW0637
    RF122:
    SAB0624c
    ST398:
    SAPIG0753
    T0131:
    SAT0131_00746
    TCH60:
    HMPREF0772_12512
    TW20:
    SATW20_07500
    USA300_TCH1516:
    USA300HOU_0698
    VC40:
    SAVC_03005

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQ
    N315            MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQ
    NCTC8325        MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQ
    Newman          MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQ
    USA300_FPR3757  MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQ
                    ************************************************************

    COL             HGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEK
    N315            HGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEK
    NCTC8325        HGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEK
    Newman          HGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEK
    USA300_FPR3757  HGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEK
                    ************************************************************

    COL             NGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFY
    N315            NGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFY
    NCTC8325        NGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFY
    Newman          NGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFY
    USA300_FPR3757  NGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFY
                    ************************************************************

    COL             VFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
    N315            VFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
    NCTC8325        VFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
    Newman          VFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
    USA300_FPR3757  VFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
                    *************************************************