From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN002680000
  • symbol?: lgt
  • description?: prolipoprotein diacylglyceryl transferase
  • strand?: +
  • coordinates?: 3178720..3179562
  • synteny block?: BlockID0019120
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0826 (lgt)
    N315:
    SA0716 (lgt)
    NCTC8325:
    Newman:
    NWMN_0729 (lgt)
    USA300_FPR3757:
    04-02981:
    SA2981_0739 (lgt)
    08BA02176:
    C248_0848 (lgt)
    11819-97:
    MS7_0811 (lgt)
    71193:
    ST398NM01_0837
    ECT-R 2:
    ECTR2_711 (lgt)
    ED133:
    SAOV_0798
    ED98:
    SAAV_0724 (lgt)
    HO 5096 0412:
    SAEMRSA15_06870 (lgt)
    JH1:
    SaurJH1_0802
    JH9:
    SaurJH9_0785
    JKD6008:
    SAA6008_00776 (lgt)
    JKD6159:
    SAA6159_00718 (lgt)
    LGA251:
    SARLGA251_06940 (lgt)
    M013:
    M013TW_0748
    MRSA252:
    SAR0815 (lgt)
    MSHR1132:
    SAMSHR1132_07060
    MSSA476:
    SAS0726
    Mu3:
    SAHV_0758 (lgt)
    Mu50:
    SAV0761 (lgt)
    MW2:
    MW0723 (lgt)
    RF122:
    SAB0714 (lgt)
    ST398:
    SAPIG0837 (lgt)
    T0131:
    SAT0131_00833
    TCH60:
    HMPREF0772_12420 (lgt)
    TW20:
    SATW20_08360 (lgt)
    USA300_TCH1516:
    USA300HOU_0789 (lgt)
    VC40:
    SAVC_03440

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSA
    N315            MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSA
    NCTC8325        MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSA
    Newman          MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSA
    USA300_FPR3757  MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSA
                    ************************************************************

    COL             LFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQ
    N315            LFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQ
    NCTC8325        LFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQ
    Newman          LFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQ
    USA300_FPR3757  LFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQ
                    ************************************************************

    COL             IGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTF
    N315            IGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTF
    NCTC8325        IGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTF
    Newman          IGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTF
    USA300_FPR3757  IGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTF
                    *****************************.******************************

    COL             LYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQL
    N315            LYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQL
    NCTC8325        LYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQL
    Newman          LYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQL
    USA300_FPR3757  LYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQL
                    ************************************************************

    COL             VSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
    N315            VSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
    NCTC8325        VSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
    Newman          VSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
    USA300_FPR3757  VSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
                    ***************************************