From AureoWiki
Jump to: navigation, search

Summary[edit source | edit]

  • pan ID?: SAUPAN002708000
  • symbol?: tpiA
  • description?: triosephosphate isomerase
  • strand?: +
  • coordinates?: 3197246..3198107
  • synteny block?: BlockID0019400
  • occurrence?: in 100% of 32 strains

Orthologs[edit source | edit]

    COL:
    SACOL0840 (tpiA)
    N315:
    SA0729 (tpiA)
    NCTC8325:
    Newman:
    NWMN_0743 (tpiA)
    USA300_FPR3757:
    04-02981:
    SA2981_0752 (tpi)
    08BA02176:
    C248_0865 (tpiA)
    11819-97:
    MS7_0825 (tpiA)
    71193:
    ST398NM01_0853
    ECT-R 2:
    ECTR2_725 (tpiA)
    ED133:
    SAOV_0816
    ED98:
    SAAV_0740 (tpiA)
    HO 5096 0412:
    SAEMRSA15_07010 (tpiA)
    JH1:
    SaurJH1_0815 (tpiA)
    JH9:
    SaurJH9_0799 (tpiA)
    JKD6008:
    SAA6008_00789 (tpi)
    JKD6159:
    SAA6159_00731 (tpi)
    LGA251:
    SARLGA251_07080 (tpiA)
    M013:
    M013TW_0765
    MRSA252:
    SAR0830 (tpiA)
    MSHR1132:
    SAMSHR1132_07200
    MSSA476:
    SAS0740 (tpiA)
    Mu3:
    SAHV_0771 (tpiA)
    Mu50:
    SAV0774 (tpiA)
    MW2:
    MW0736 (tpiA)
    RF122:
    SAB0730 (tpiA)
    ST398:
    SAPIG0853 (tpiA)
    T0131:
    SAT0131_00847 (hlb)
    TCH60:
    HMPREF0772_12404 (tpiA)
    TW20:
    SATW20_08490 (tpiA)
    USA300_TCH1516:
    USA300HOU_0804 (tpiA)
    VC40:
    SAVC_03515 (tpiA)

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.205)


    COL             MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG
    N315            MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG
    NCTC8325        MRTPIIAGNWKMNKTVQEAKDFVNTLPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG
    Newman          MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG
    USA300_FPR3757  MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG
                    ************************:***********************************

    COL             LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFK
    N315            LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFK
    NCTC8325        LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFK
    Newman          LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFK
    USA300_FPR3757  LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFK
                    ************************************************************

    COL             HGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSS
    N315            HGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSS
    NCTC8325        HGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSS
    Newman          HGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSS
    USA300_FPR3757  HGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSS
                    ************************************************************

    COL             TSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL
    N315            TSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL
    NCTC8325        TSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL
    Newman          TSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL
    USA300_FPR3757  TSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASL
                    ************************************************************

    COL             KVEDFVQLLEGAK
    N315            KVEDFVQLLEGAK
    NCTC8325        KVEDFVQLLEGAK
    Newman          KVEDFVQLLEGAK
    USA300_FPR3757  KVEDFVQLLEGAK
                    *************