From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

Summary[edit source | edit]

  • pan ID?: SAUPAN002716000
  • symbol?: tmRNA
  • description?: sRNA

      descriptions from strain specific annotations:

    • sRNA
    • 10Sa RNA (tmRNA)
    • tmRNA SsrA
  • strand?: +
  • coordinates?: 3206029..3206358
  • synteny block?: BlockID0019480
  • occurrence?: in 41% of 32 strains

Orthologs[edit source | edit]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_miscRNA0009
    JH1:
    JH9:
    SaurJH9_R0024 (ssrA)
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    SARs006 (tmRNA)
    MSHR1132:
    MSSA476:
    SASs006 (tmRNA)
    Mu3:
    SAHV_tm0001
    Mu50:
    SAVtmRNA01 (tmRNA)
    MW2:
    MWtmRNA01
    RF122:
    ST398:
    T0131:
    TCH60:
    HMPREF0772_nc10038
    TW20:
    USA300_TCH1516:
    USA300HOU_nc0003 (ssrA)
    VC40:

Genome Viewer[edit source | edit]

COL chromosome
N315 chromosome
Newman chromosome
USA300_FPR3757 chromosome

Alignments[edit source | edit]

  • alignment of orthologues: